View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_high_39 (Length: 249)
Name: NF3648_high_39
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7665106 - 7664866
Alignment:
| Q |
1 |
cttgaagcaaagagagtcgcatttgaggaaactaaactgacttcgcctaacatcagcttccatcaacaagttattataactttccacacctcgattcata |
100 |
Q |
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| T |
7665106 |
cttgaagcaaagagagtcacatttgaggaaactaaaccgacttcggctaacatcatcttccatcaacaagttgttatagatttccacacctcgattcgta |
7665007 |
T |
|
| Q |
101 |
tcaaattgatctggaatttgagtagaaccatttacaaaggaaatcttgttgttagcgcccaatgcacattgcatagagcgactccttgcaaggtagtttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7665006 |
tcaaattgatctggaatttgagtagaaccatttacaaaggaaatcttgttgttagcg-ccaatgcacattgcatagagcgactccttgcaaggtagtttg |
7664908 |
T |
|
| Q |
201 |
ctaagcttatgagtaatagcaactgaattaggtcctatgctt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7664907 |
ctaagcttatgagtaatagcaactgaattaggtcctttgctt |
7664866 |
T |
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