View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_high_42 (Length: 248)
Name: NF3648_high_42
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 15983853 - 15983629
Alignment:
| Q |
11 |
cagagaaggaggtgagtttggtgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacct |
110 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15983853 |
cagagaaggaggtgagtctggtgacatagcaagggcagatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacct |
15983754 |
T |
|
| Q |
111 |
acttgtaggaatcctggtgataagtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgatt |
210 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15983753 |
acttgtaggaatcctggtgataagtttgacaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgatt |
15983654 |
T |
|
| Q |
211 |
gccaagaaatgtgttggagtaactg |
235 |
Q |
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||||||||||||||||||||||||| |
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| T |
15983653 |
gccaagaaatgtgttggagtaactg |
15983629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 15953295 - 15953519
Alignment:
| Q |
11 |
cagagaaggaggtgagtttggtgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15953295 |
cagagaaggaggtgagtttggtgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagccaagatacct |
15953394 |
T |
|
| Q |
111 |
acttgtaggaatcctggtgataagtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgatt |
210 |
Q |
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|||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15953395 |
gcttgcaggaatcctggtgataagtttgataacaagcacgtttacagtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgatt |
15953494 |
T |
|
| Q |
211 |
gccaagaaatgtgttggagtaactg |
235 |
Q |
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||||||||||||| |||| |||||| |
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| T |
15953495 |
gccaagaaatgtgctggactaactg |
15953519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 19150750 - 19150526
Alignment:
| Q |
11 |
cagagaaggaggtgagtttggtgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacct |
110 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19150750 |
cagagaaggaggtgcgtctggtgacatagcaagggctgatatgtgtaatgggtataacactaacggagggtgccaaaaatggggtgaagccaagatacct |
19150651 |
T |
|
| Q |
111 |
acttgtaggaatcctggtgataagtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgatt |
210 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||| |||||||||||| ||||||||||||| |
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| T |
19150650 |
gcttgcaggaatcctggtgataagtttgagaacaagcccgtttacagtaatgacaatatagtatacaatataaaaaatgctagtttaggcataagtgatt |
19150551 |
T |
|
| Q |
211 |
gccaagaaatgtgttggagtaactg |
235 |
Q |
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||||||||||||| ||| ||||||| |
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| T |
19150550 |
gccaagaaatgtgctggggtaactg |
19150526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 32 - 235
Target Start/End: Original strand, 16004814 - 16005017
Alignment:
| Q |
32 |
tgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacctacttgtaggaatcctggtgat |
131 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||| |||| | | ||||||| |||| ||||||||||||||| |
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| T |
16004814 |
tgacatagcaagagctgatatatgttatgggtataacactaatggagggtgccaaaagtggcgtgatgtggagatacctgcttgcaggaatcctggtgat |
16004913 |
T |
|
| Q |
132 |
aagtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaagaaatgtgttggagta |
231 |
Q |
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| |||||| | |||| || | | ||||| | |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
16004914 |
atgtttgatagcaagttaggattcagtaataaagatatgttatacaatatagaaaatgctagttatggcataagtgattgccaagatatgtgctggagta |
16005013 |
T |
|
| Q |
232 |
actg |
235 |
Q |
| |
|
|||| |
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|
| T |
16005014 |
actg |
16005017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 19185612 - 19185813
Alignment:
| Q |
34 |
acatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacctacttgtaggaatcctggtgataa |
133 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| || | || ||||||||||||||||| |||| ||||||||| || |||||||||||||||| |
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| T |
19185612 |
acataggaagggctgatatgtgttatgggtataacacgaatgatggatgccaaaaatggggtgatgcagagatacctacatgccggaatcctggtgataa |
19185711 |
T |
|
| Q |
134 |
gtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaagaaatgtgttggagtaac |
233 |
Q |
| |
|
|||||| | |||| ||||||| |||||| || || | | || |||| |||| |||| ||||||||||||||||||||||| ||||||||| ||||| |
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| T |
19185712 |
gtttgatagcaagatagtttaccctaatgaaaaaattgaataccatattctaaattctagctatggcataagtgattgccaagatatgtgttggcgtaac |
19185811 |
T |
|
| Q |
234 |
tg |
235 |
Q |
| |
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|| |
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| T |
19185812 |
tg |
19185813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 15965131 - 15965013
Alignment:
| Q |
117 |
aggaatcctggtgataagtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaag |
216 |
Q |
| |
|
|||||||||||||||| |||||| | |||| |||||||| |||||| ||||| ||| || |||||| |||| ||| ||||||||||| ||| ||| ||| |
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| T |
15965131 |
aggaatcctggtgatatgtttgatagcaagttagtttacgttaatgaaaatatggtatacgatatagcaaatactaattatggcataaatgactgcgaag |
15965032 |
T |
|
| Q |
217 |
aaatgtgttggagtaactg |
235 |
Q |
| |
|
|||| || ||||||||||| |
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| T |
15965031 |
aaatatgctggagtaactg |
15965013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 15979557 - 15979499
Alignment:
| Q |
31 |
gtgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaa |
89 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| |
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|
| T |
15979557 |
gtgacatagcaagggctgatttgtgttatgggtataacactaatggagggtgtcaaaaa |
15979499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 19126393 - 19126345
Alignment:
| Q |
34 |
acatagcaagggctgatatgtgttatgggtataacactaacggagggtg |
82 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
19126393 |
acatagcaagggctgatttgtgttatgggtataacactaatggagggtg |
19126345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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