View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_high_49 (Length: 232)
Name: NF3648_high_49
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1236374 - 1236153
Alignment:
| Q |
1 |
tttgcctcagtttttacccctttaatgcttctcatggtagctttggctggttgtaccatattgaatgagaaactacaccttggaaggtatatttgctttt |
100 |
Q |
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| T |
1236374 |
tttgcctcagtttttacccctttaatgcttctcatggtagctttggctggttgtaccatattgaatgagaaactacaccttggaaggtatatttgctttt |
1236275 |
T |
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| Q |
101 |
ctcaa-tttattaatcattctaagaatgtttttgaaatactaagttgtttaattggaccctaattttttgaggtaaaatatatataatacttactttatt |
199 |
Q |
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| T |
1236274 |
ctcaattttattaatcattctaagaatgtttttgaaatactaagttgtttaattggaccctaattttttgaggtaaa----atctaatacttactttatt |
1236179 |
T |
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| Q |
200 |
ggcacacttaaaatttgttacctttg |
225 |
Q |
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| T |
1236178 |
ggcacacttaaaatttgttacctttg |
1236153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 916439 - 916350
Alignment:
| Q |
1 |
tttgcctcagtttttacccctttaatgcttctcatggtagctttggctggttgtaccatattgaatgagaaactacaccttggaaggtat |
90 |
Q |
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|||||||| | ||||| ||||||| | ||| |||| || || || ||| |||||||||| ||||||||||| ||| |||||||||||||| |
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| T |
916439 |
tttgcctctgcttttaaccctttagtacttgtcattgtggccttagctagttgtaccatgttgaatgagaatctataccttggaaggtat |
916350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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