View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_high_52 (Length: 227)
Name: NF3648_high_52
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_52 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 32055931 - 32055709
Alignment:
| Q |
5 |
cagttttatgcaatatgccagaatatcccttgtatttcagctttacatatgtaccatgtaatgaaacatacatggaatctcatattaggcggttaaaaca |
104 |
Q |
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| T |
32055931 |
cagttttatgcaatatgccagaatatcccttgtatttcagctttacatatgtaccatgtaatgaaacatacatggaatctcatattaggcggttaaaaca |
32055832 |
T |
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| Q |
105 |
aagccaagaatgtaagacaaagtatctttgaggtaatgaaaaagaggaagctaaattacataacattagattagatggtcaaattgataaggattcaact |
204 |
Q |
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| T |
32055831 |
atgccaagaatgtaagacaaagtatctttgaggtaatgaaaaagaggaagccaaattacataatattagattagatggtcaaattgataaggattcaact |
32055732 |
T |
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| Q |
205 |
cagatcacacaataagcataatt |
227 |
Q |
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| T |
32055731 |
cagatcatacaataagcataatt |
32055709 |
T |
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