View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_high_6 (Length: 441)
Name: NF3648_high_6
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 28595291 - 28594864
Alignment:
| Q |
1 |
tgaaaatgaagacgaatgagagatgcagccagacgacgctccttagagacagcaggacgaattggagttctgatagtgcttaatgcattagggcatgtac |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
28595291 |
tgaaaatgaagacgaatgagagatgcagccatacgacgctccttagagacagcagtacgaatggcagttctgatagtgcttaatgcattagggcatgtac |
28595192 |
T |
|
| Q |
101 |
catcgtaaaacgtagaagacaattgtgcatcacatattgaacttagtagcaccaatgtgacaataaaaataggcgtaattataaaagccatcgaatgcaa |
200 |
Q |
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| T |
28595191 |
catcgtaaaacgtagaagacaattgtgcatcacatattgaacttagtagcaccaatgtgacaataaaactagtcgtaattctaaaagccatcgaatgcaa |
28595092 |
T |
|
| Q |
201 |
actggaatgttaattaattactttataatatgagttgaatataattaattattttcttttacttgacacacagataatggaaga-aaaaggtaatattat |
299 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
28595091 |
actggaatgttaatatattactttattatatgagttgaatataattaattattttcttttacttgatacacagataatggaagaaaaaaggtaatattat |
28594992 |
T |
|
| Q |
300 |
tgttgttaacgagattgatgagaatgagagaatgttgaaga----aatgatattggttgatggagaagaggatgtgagttctcaagaatttatagaatgc |
395 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
28594991 |
tgttgttaacgagattgatgagaat--gagaatgttgaagaaattaatgatattggttgatggagaagaggatttgagttctcatgaatttatagaatgc |
28594894 |
T |
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| Q |
396 |
atacatatgtgtttgttgtatgagaatatt |
425 |
Q |
| |
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| T |
28594893 |
atacatatgtgtttgttgtatgagaatatt |
28594864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 32493513 - 32493298
Alignment:
| Q |
1 |
tgaaaatgaagacgaatgagagatgcagccagacgacgctccttagagacagcaggacgaattggagttctgatagtgcttaatgcattagggcatgtac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
32493513 |
tgaaaatgaagacgaatgagagatgcagccatacgacgctctttagagacagcggtacgaatcacagttctgatagtgcttagtgcattagggcatgtac |
32493414 |
T |
|
| Q |
101 |
catcgtaaaacgtagaagacaattgtgcatcacatattgaacttagtagcaccaatgtgacaataaaaataggcgtaattataaaagccatcgaatgcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| || | ||||| |||||||||| ||||||| |
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| T |
32493413 |
tatcgtaaaacgtagaagacaattgtgcatcacatattgagcttagcagcaccaatgtgacaacaaaactaatcataattctaaaagccatagaatgcat |
32493314 |
T |
|
| Q |
201 |
actggaatgttaatta |
216 |
Q |
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|||||||| ||||||| |
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| T |
32493313 |
actggaatattaatta |
32493298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 28587519 - 28587653
Alignment:
| Q |
1 |
tgaaaatgaagacgaatgagagatgcagccagacgacgctccttagagacagcaggacgaattggagttctgatagtgcttaatgcattagggcatgtac |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| | ||||||||| ||||||| |||||||||||| |||| |
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| T |
28587519 |
tgaaagtgaagacgaatgagagatgcagccatacgacgctccttagagattgcagtacgaatcgaagttctgatggtgcttagtgcattagggcaagtac |
28587618 |
T |
|
| Q |
101 |
catcgtaaaacgtagaagacaattgtgcatcacat |
135 |
Q |
| |
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| T |
28587619 |
tgtcataaaatgtagaagataattgggcatcacat |
28587653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28592693 - 28592831
Alignment:
| Q |
1 |
tgaaaatgaagacgaatgagagatgcagccagacgacgctccttagagacagcaggacgaattggagttctgatagtgcttaatgcattagggcatgtac |
100 |
Q |
| |
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||||||||||| ||||||| |||||| |||| |||| ||||||||||||||||| |||||| | |||||| ||||||||||| |||||||||||||||| |
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| T |
28592693 |
tgaaaatgaaggcgaatgacagatgccgccatgcgacactccttagagacagcagtacgaatcgaagttctaatagtgcttaaggcattagggcatgtac |
28592792 |
T |
|
| Q |
101 |
catcgtaaaacgtagaagacaattgtgcatcacatattg |
139 |
Q |
| |
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||||| || |||||||| | || ||||||||||||| |
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| T |
28592793 |
tgtcgtagaaagtagaagaaagctgcgcatcacatattg |
28592831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 32493206 - 32493108
Alignment:
| Q |
330 |
aatgttgaagaaatgat---attggttgatggagaagaggatgtgagttctcaagaatttatagaatgcatacatatgtgtttgttgtatgagaatattt |
426 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||| |||| ||||||||| |
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| T |
32493206 |
aatgttgaagagatgatgatattggttgatggagaagagggtatgagttctcatcaatttatagaatgcatacatat-agtttgtagtataagaatattt |
32493108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 28592984 - 28593046
Alignment:
| Q |
335 |
tgaagaaatgatattggttgatggagaagaggatgtgagttctcaagaatttatagaatgcat |
397 |
Q |
| |
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|||||| ||||||||||||||||||||||||| | ||||||||| ||||||||| |||||| |
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| T |
28592984 |
tgaagagatgatattggttgatggagaagagggtacgagttctcatcaatttatagcatgcat |
28593046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 28587775 - 28587808
Alignment:
| Q |
342 |
atgatattggttgatggagaagaggatgtgagtt |
375 |
Q |
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| T |
28587775 |
atgatattggttgatggagaagagggtgtgagtt |
28587808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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