View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_low_10 (Length: 428)
Name: NF3648_low_10
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_10 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0087 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 39 - 283
Target Start/End: Original strand, 4388692 - 4388936
Alignment:
| Q |
39 |
gattattatttgtgaagaaaatatttcatgactacaaagagcagcatgattattgagacaagttgtctgttggaaagcgaggagatgcttcatatgatgg |
138 |
Q |
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| T |
4388692 |
gattattatttgtgaagaaaatatttcatgactacaaagagcagcatgattattgagacaagttgtcttttggaaagcgaggagatgcttcatatgatgg |
4388791 |
T |
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| Q |
139 |
agcggttgaatttagaagtggaatacattagagacatggaaaaacttatgtttatagcaagcttcaagaatcaagaaaattattgcatcatgaagagaaa |
238 |
Q |
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| T |
4388792 |
agcggttgaatttagaagtggaatacattagagacatggaaaaacttatgtttatagcaagcttcaagaatcaagaaaattattgcatcatgaagagaaa |
4388891 |
T |
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| Q |
239 |
gagaagaatgaagattagttacacagataacttgttggacggttt |
283 |
Q |
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| T |
4388892 |
gagaagaatgaagattagttacacagataacttgttggacagttt |
4388936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 279 - 412
Target Start/End: Original strand, 4388956 - 4389089
Alignment:
| Q |
279 |
ggtttctatagtctacaatcattgtaatacagttactataaaccttcataagctctatattagttgtaatgctacactttcatcaattaatgagaattta |
378 |
Q |
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| T |
4388956 |
ggtttctatagtctacaatcattgtaatacagttactataaaccttcataagctctatattagttgtaatgctacactttcatcaattaatgagaattta |
4389055 |
T |
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| Q |
379 |
cttgattcatttcttctctcataatacacattat |
412 |
Q |
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| T |
4389056 |
cttgattcatttcttctctcataatacacattat |
4389089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 391
Target Start/End: Complemental strand, 14027 - 13933
Alignment:
| Q |
297 |
tcattgtaatacagttactataaaccttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttacttgattcatttc |
391 |
Q |
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| T |
14027 |
tcattgtaatatagctatcatacaccttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttacttcgttcatttc |
13933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 2837 - 2896
Alignment:
| Q |
320 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
379 |
Q |
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| T |
2837 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
2896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 7586 - 7645
Alignment:
| Q |
320 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
379 |
Q |
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| T |
7586 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
7645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 17726 - 17785
Alignment:
| Q |
320 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
379 |
Q |
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| T |
17726 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
17785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 5842684 - 5842743
Alignment:
| Q |
320 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
379 |
Q |
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| T |
5842684 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
5842743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 9606683 - 9606639
Alignment:
| Q |
360 |
atcaattaatgagaatttacttgattcatttcttctctcataata |
404 |
Q |
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| T |
9606683 |
atcaattaatgataatttacttcattcatttcttctttcataata |
9606639 |
T |
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