View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3648_low_12 (Length: 420)
Name: NF3648_low_12
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_12 |
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| [»] scaffold0242 (2 HSPs) |
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| [»] scaffold0024 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 6911929 - 6911577
Alignment:
| Q |
19 |
gaagatgttgttgaagttgatgaaaaatggttcgtttatggagctgagcagaaggatgaggtcactaagtacatttcttctaggagagagattggttacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
6911929 |
gaagatgttgttgaagttgatgaaaaatggtttgtttatggagctgagcagaaggatgaggtcactaagtacatttcctctaggagaga--ttggttacc |
6911832 |
T |
|
| Q |
119 |
aaaactgacttcagtttagttgtttgacagatattatcaattacatactagtaatctgccagggataatttaaggttttaacatgtattgaaagtgtcct |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6911831 |
aaaactgacttcagtttagttgtttgacagatattatcaattacatactagtaatctgccagggataatttaaggttttaacatgtattgaaagtgtcct |
6911732 |
T |
|
| Q |
219 |
aagttacagtgttttggtgataaagacaagaatccttaggcttcaatgcaattagttacaatttgtagctggttaattttattttttgtaacttttcaaa |
318 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6911731 |
aagttccagtgttttggtgataaagacaagaatccttaggtttcaatgcaattagttacaatttgtagctggttaattttattttttgtaacttttcaaa |
6911632 |
T |
|
| Q |
319 |
tagtattagtaaggatgcagattttgaccaagtgttgaggtaaaatgtttttaaatcaaca |
379 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6911631 |
t------agtaaggatgcagattttgaccaagtgttgaggtaaaatgtttttaaatcaaca |
6911577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Complemental strand, 53884 - 53856
Alignment:
| Q |
392 |
acctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
53884 |
acctccgtttctttttaattgtcacattt |
53856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 364530 - 364558
Alignment:
| Q |
392 |
acctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
364530 |
acctccgtttctttttaattgtcacattt |
364558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 15510 - 15206
Alignment:
| Q |
19 |
gaagatgttgttgaagttgatgaaaaatggttcgtttatggagctgagcagaaggatgaggtcactaagtacatttcttctaggagagagattggttacc |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||| ||||||||| |
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|
| T |
15510 |
gaagatgctgttgaagttgatgaaaaatggtttgtttatggagctgtgcagaaggatgaggtcaataagtacaattcctctaggagaga--ttggttacc |
15413 |
T |
|
| Q |
119 |
aaaactgacttcagtttagttgtttgacagatattatcaattacatactagtaatctgccagggataatttaaggttttaacatgtattgaaagtgtcct |
218 |
Q |
| |
|
||| || |||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
15412 |
aaagctaacttttgtttagttgtttgagagatattaccaattacatactagtaatctga-agggataatttaaggttttaacatgtattaaaagtgtcct |
15314 |
T |
|
| Q |
219 |
aagttacagtgttttggtgataaagacaagaatccttagg-------cttcaatgcaattagttacaatttgtagctggttaattttattttttgtaact |
311 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
15313 |
aagttccagtgttttggtgataaagacaagaatccttaggtttcaaatttcaatgcaattagttacaatttgtagctggttaattttaattttcgtaact |
15214 |
T |
|
| Q |
312 |
tttcaaat |
319 |
Q |
| |
|
|||||||| |
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|
| T |
15213 |
tttcaaat |
15206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 24345 - 24041
Alignment:
| Q |
19 |
gaagatgttgttgaagttgatgaaaaatggttcgtttatggagctgagcagaaggatgaggtcactaagtacatttcttctaggagagagattggttacc |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||| ||||||||| |
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|
| T |
24345 |
gaagatgctgttgaagttgatgaaaaatggtttgtttatggagctgtgcagaaggatgaggtcaataagtacaattcctctaggagaga--ttggttacc |
24248 |
T |
|
| Q |
119 |
aaaactgacttcagtttagttgtttgacagatattatcaattacatactagtaatctgccagggataatttaaggttttaacatgtattgaaagtgtcct |
218 |
Q |
| |
|
||| || |||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
24247 |
aaagctaacttttgtttagttgtttgagagatattaccaattacatactagtaatctga-agggataatttaaggttttaacatgtattaaaagtgtcct |
24149 |
T |
|
| Q |
219 |
aagttacagtgttttggtgataaagacaagaatccttagg-------cttcaatgcaattagttacaatttgtagctggttaattttattttttgtaact |
311 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
24148 |
aagttccagtgttttggtgataaagacaagaatccttaggtttcaaatttcaatgcaattagttacaatttgtagctggttaattttaattttcgtaact |
24049 |
T |
|
| Q |
312 |
tttcaaat |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
24048 |
tttcaaat |
24041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 158064 - 158174
Alignment:
| Q |
19 |
gaagatgttgttgaagttgatgaaaaatggttcgtttatggagctgagcagaaggatgaggtcactaagtacatttcttctaggagagagattggttacc |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||||| | |||||||||||| ||||| |||| |||||||||| |
|
|
| T |
158064 |
gaagatggtgttgaagttgatgaaaaatggtttgtttatggagctgaacagaaggacgaggttaataagtacatttcctctag--gagacattggttacc |
158161 |
T |
|
| Q |
119 |
aaaactgacttca |
131 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
158162 |
aaagctgacttca |
158174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 158214 - 158287
Alignment:
| Q |
230 |
ttttggtgataaagacaagaatccttaggcttcaatgcaattagttacaatttgtagctggttaattttatttt |
303 |
Q |
| |
|
||||||||||| |||||||| |||||| | ||||||| |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
158214 |
ttttggtgatagagacaagactccttaagtttcaatgtaattagttaccatttgtagctggtttcttttatttt |
158287 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 44069292 - 44069259
Alignment:
| Q |
387 |
ctaccacctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
44069292 |
ctactacctccgtttctttttaattgtcacattt |
44069259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Complemental strand, 47251669 - 47251641
Alignment:
| Q |
392 |
acctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47251669 |
acctccgtttctttttaattgtcacattt |
47251641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 38648715 - 38648682
Alignment:
| Q |
387 |
ctaccacctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
38648715 |
ctactacctccgtttctttttaattgtcacattt |
38648682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 48264760 - 48264788
Alignment:
| Q |
392 |
acctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48264760 |
acctccgtttctttttaattgtcacattt |
48264788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 25703565 - 25703593
Alignment:
| Q |
392 |
acctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25703565 |
acctccgtttctttttaattgtcacattt |
25703593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 25812736 - 25812764
Alignment:
| Q |
392 |
acctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25812736 |
acctccgtttctttttaattgtcacattt |
25812764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 1087917 - 1087945
Alignment:
| Q |
392 |
acctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1087917 |
acctccgtttctttttaattgtcacattt |
1087945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 10889172 - 10889200
Alignment:
| Q |
392 |
acctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10889172 |
acctccgtttctttttaattgtcacattt |
10889200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 35458497 - 35458525
Alignment:
| Q |
392 |
acctccgtttctttttaattgtcacattt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35458497 |
acctccgtttctttttaattgtcacattt |
35458525 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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