View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_low_13 (Length: 416)

Name: NF3648_low_13
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_low_13
NF3648_low_13
[»] chr7 (2 HSPs)
chr7 (7-212)||(44064558-44064763)
chr7 (332-400)||(44064370-44064438)
[»] scaffold0020 (1 HSPs)
scaffold0020 (70-138)||(156815-156883)
[»] chr3 (3 HSPs)
chr3 (57-123)||(39340758-39340823)
chr3 (57-93)||(16301297-16301333)
chr3 (57-93)||(54184787-54184823)
[»] chr8 (5 HSPs)
chr8 (57-94)||(30658316-30658353)
chr8 (57-93)||(7921248-7921284)
chr8 (57-93)||(9135772-9135808)
chr8 (65-93)||(18595704-18595732)
chr8 (57-93)||(27751174-27751210)
[»] chr6 (1 HSPs)
chr6 (57-93)||(32400917-32400953)
[»] chr2 (1 HSPs)
chr2 (57-93)||(20579904-20579940)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 44064763 - 44064558
Alignment:
Q  7 acatcatcacatacaaaaccagaggttaattacacaaccaaattttcctcaaaataaagggtcaaatatgtttttagtctctataaaactcactgttttt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44064763 acatcaccacatacaaaaccagaggttaattacacaaccaaattttcctcaaaataaagggtcaaatatgtttttagtctctataaaactcacggttttt 44064664  T
Q  107 caagtttagtccctatatgaattttgttcaattttattccaaaggtgccaaatacagacaggactaacaacattcgtttattttgtaaaatttttaaaac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  44064663 caagtttagtccctatatgaattttgttcaattttattccaaaggtgccaaatacagacagggctaacaacattcgtttattttgtaaattttttaaaac 44064564  T
Q  207 aaggac 212  Q
    ||||||    
T  44064563 aaggac 44064558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 44064438 - 44064370
Alignment:
Q  332 gtggagaattatatacttgataagaagataggagcatctctgcggcgtgcttcagcgaaagcttcttca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44064438 gtggagaattatatacttgataagaagataggagcatctctgcggcgtgcttcagcgaaagcttcttca 44064370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 156815 - 156883
Alignment:
Q  70 aaatatgtttttagtctctataaaactcactgtttttcaagtttagtccctatatgaattttgttcaat 138  Q
    ||||||||||| |||| |||||||| ||| | |||||||||||||||||||| || || | ||||||||    
T  156815 aaatatgttttaagtccctataaaattcaatatttttcaagtttagtccctaaataaagtatgttcaat 156883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 39340758 - 39340823
Alignment:
Q  57 aaaataaagggtcaaatatgtttttagtctctataaaactcactgtttttcaagtttagtccctata 123  Q
    |||||||||||| ||||||||||| |||| ||| |||| |||||  |||| ||||||||||||||||    
T  39340758 aaaataaagggttaaatatgttttgagtccctacaaaa-tcactagtttttaagtttagtccctata 39340823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 16301333 - 16301297
Alignment:
Q  57 aaaataaagggtcaaatatgtttttagtctctataaa 93  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  16301333 aaaattaagggttaaatatgtttttagtctctataaa 16301297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 54184823 - 54184787
Alignment:
Q  57 aaaataaagggtcaaatatgtttttagtctctataaa 93  Q
    |||||||||||| |||||||||||||||| |||||||    
T  54184823 aaaataaagggttaaatatgtttttagtccctataaa 54184787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 30658316 - 30658353
Alignment:
Q  57 aaaataaagggtcaaatatgtttttagtctctataaaa 94  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  30658316 aaaataaagggtcaaatatgtttttggtccctataaaa 30658353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 7921284 - 7921248
Alignment:
Q  57 aaaataaagggtcaaatatgtttttagtctctataaa 93  Q
    |||||||||||| |||||||||||||||| |||||||    
T  7921284 aaaataaagggttaaatatgtttttagtccctataaa 7921248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 9135808 - 9135772
Alignment:
Q  57 aaaataaagggtcaaatatgtttttagtctctataaa 93  Q
    |||||||||||| |||||||||||||||| |||||||    
T  9135808 aaaataaagggttaaatatgtttttagtccctataaa 9135772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 18595704 - 18595732
Alignment:
Q  65 gggtcaaatatgtttttagtctctataaa 93  Q
    |||||||||||||||||||||||||||||    
T  18595704 gggtcaaatatgtttttagtctctataaa 18595732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 27751174 - 27751210
Alignment:
Q  57 aaaataaagggtcaaatatgtttttagtctctataaa 93  Q
    |||||||||||| || |||||||||||||||||||||    
T  27751174 aaaataaagggttaactatgtttttagtctctataaa 27751210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 32400953 - 32400917
Alignment:
Q  57 aaaataaagggtcaaatatgtttttagtctctataaa 93  Q
    |||||||||||| |||||||||||||||| |||||||    
T  32400953 aaaataaagggttaaatatgtttttagtccctataaa 32400917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 20579940 - 20579904
Alignment:
Q  57 aaaataaagggtcaaatatgtttttagtctctataaa 93  Q
    ||||||||| || ||||||||||||||||||||||||    
T  20579940 aaaataaagagttaaatatgtttttagtctctataaa 20579904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University