View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_low_16 (Length: 389)

Name: NF3648_low_16
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_low_16
NF3648_low_16
[»] chr6 (7 HSPs)
chr6 (207-378)||(29364027-29364198)
chr6 (69-173)||(29362767-29362871)
chr6 (79-133)||(24270233-24270287)
chr6 (173-214)||(29362910-29362951)
chr6 (83-126)||(29351712-29351755)
chr6 (212-307)||(29353713-29353809)
chr6 (130-162)||(29915444-29915476)
[»] chr5 (2 HSPs)
chr5 (77-162)||(27753866-27753946)
chr5 (185-250)||(27754121-27754192)
[»] chr7 (1 HSPs)
chr7 (214-279)||(29358638-29358703)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 207 - 378
Target Start/End: Original strand, 29364027 - 29364198
Alignment:
Q  207 atcatcaaaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattgcttggtaattttctcttcaacacacat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29364027 atcatcaaaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattgcttggtaattttctcatcaacacacat 29364126  T
Q  307 acaccctttactatcaacccagaaattcaaatcaaacattctctctcattttgacaaaaactcaaacttcat 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29364127 acaccctttactatcaacccagaaattcaaatcaaacattctctctcattttgacaaaaactcaaacctcat 29364198  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 29362767 - 29362871
Alignment:
Q  69 gttttctatatacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatgttgcaggcacatgaacatagagttattgtccatta 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  29362767 gttttctatatacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatgttctaggcacatgaacatagagttattgtccatta 29362866  T
Q  169 accac 173  Q
    |||||    
T  29362867 accac 29362871  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 24270233 - 24270287
Alignment:
Q  79 tacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatg 133  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24270233 tacacaaatgtgctgcaaatatatagaaaagcatagtattctatacataaatatg 24270287  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 29362910 - 29362951
Alignment:
Q  173 caactcatagaactaagagattcgttattactgaatcatcaa 214  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  29362910 caactcatagaacttagagattcgttattactgaatcatcaa 29362951  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 29351712 - 29351755
Alignment:
Q  83 caaatgtgctgcaaatatacagaaaagcatagtattctatacat 126  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||    
T  29351712 caaatgtgctgcaaatatatagaaaaacatagtattctttacat 29351755  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 29353713 - 29353809
Alignment:
Q  212 caaaacaaaaagaattcaactttttctctcttatttcc--gaaaaaatcaactttctttctcaacaattgcttggtaattttctcttcaacacacata 307  Q
    |||||| |||||||||| |||||||||||| | |||||   |||||||| |||||||| |||||||| | || ||||||| | || ||||||||||||    
T  29353713 caaaacgaaaagaattcgactttttctctcct-tttccaaaaaaaaatcgactttcttcctcaacaactactaggtaattatatcatcaacacacata 29353809  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 29915476 - 29915444
Alignment:
Q  130 tatgttgcaggcacatgaacatagagttattgt 162  Q
    |||||| ||||||||||||||||||||||||||    
T  29915476 tatgttacaggcacatgaacatagagttattgt 29915444  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 27753866 - 27753946
Alignment:
Q  77 tatacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatgttgcaggcacatgaacatagagttattgt 162  Q
    ||||||||||| ||||||||||||| ||||     ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27753866 tatacacaaatatgctgcaaatataaagaa-----tagtattctatacataaatatgttgtaggcacatgaacatagagttattgt 27753946  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 27754121 - 27754192
Alignment:
Q  185 ctaagagattcgttattactgaatcatc------aaaacaaaaagaattcaactttttctctcttatttccg 250  Q
    ||||||||||| |||||| |||||||||      ||||||||||||||||||||||||||||||||||||||    
T  27754121 ctaagagattcattattattgaatcatcgaaacaaaaacaaaaagaattcaactttttctctcttatttccg 27754192  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 29358703 - 29358638
Alignment:
Q  214 aaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattg 279  Q
    ||||||||||||||||||||| |||||| | ||||| ||||| | |||||||| ||||||||||||    
T  29358703 aaacaaaaagaattcaactttctctctcctttttccaaaaaactaaactttctctctcaacaattg 29358638  T

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