View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_low_18 (Length: 378)
Name: NF3648_low_18
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 12 - 364
Target Start/End: Complemental strand, 43396648 - 43396296
Alignment:
| Q |
12 |
ccaccaccatcattctctttctgtctataacccaatagccatgcatgacaaatagcagccaccatcgatgccgtacctgcaccacatacaaataaattcc |
111 |
Q |
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| T |
43396648 |
ccaccaccatcattctctttctgtctataacccaatagccatgcatggcaaatagcagccaccatcgacgccgtacctgcaccacatacaaataaattcc |
43396549 |
T |
|
| Q |
112 |
acactttccaacactcccaaaatcaaatcaacaaaacaaattcagtccatgcttggtctcacgtgagtttatcaaaatcacagcgagctaccgtagcttt |
211 |
Q |
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| T |
43396548 |
acactttccaacactcccaaaatcaaatcaacaaaacaaattcagtccatgtttggtctcacgtgagtttatcaaaatcacagtgagctaccgtagcttt |
43396449 |
T |
|
| Q |
212 |
tgaaaattataatgctcacagtgattccgacaaatttagcatgatagaaaacatgcattcaagtttttcactaactgtttaaatgcccagaaagcacaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396448 |
tgaaaattataatgctcacagtgattccgacaaatttagcatgatagaaaacatgcattcaagtttttcactaactgtttaaatgcccagaaagcacaat |
43396349 |
T |
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| Q |
312 |
tttgatttcgacatttgtatgaagctctcccttcgagaatctctgaaacaaat |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396348 |
tttgatttcgacatttgtatgaagctctcccttcgagaatctctgaaacaaat |
43396296 |
T |
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