View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_low_2 (Length: 687)

Name: NF3648_low_2
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_low_2
NF3648_low_2
[»] chr1 (6 HSPs)
chr1 (1-677)||(6968378-6969054)
chr1 (1-293)||(1000205-1000502)
chr1 (40-391)||(2177955-2178306)
chr1 (27-340)||(51316041-51316361)
chr1 (487-594)||(2177799-2177906)
chr1 (616-677)||(1000533-1000595)
[»] chr4 (1 HSPs)
chr4 (502-603)||(44396177-44396278)
[»] chr6 (8 HSPs)
chr6 (99-151)||(2842791-2842843)
chr6 (339-386)||(2829147-2829194)
chr6 (342-392)||(2833023-2833073)
chr6 (99-151)||(2829385-2829437)
chr6 (502-559)||(2860462-2860519)
chr6 (502-559)||(2865841-2865898)
chr6 (99-151)||(2832777-2832829)
chr6 (99-151)||(2909484-2909536)


Alignment Details
Target: chr1 (Bit Score: 653; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 1 - 677
Target Start/End: Complemental strand, 6969054 - 6968378
Alignment:
Q  1 cttctttcttggctttcatctcagcttcttccttggaggttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcatcagctaccttagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6969054 cttctttcttggctttcatctcagcttcttccttggaggttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcctcagctaccttagg 6968955  T
Q  101 catcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagactcaatactcagataattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6968954 catcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattc 6968855  T
Q  201 attgccaacattttgaatccatcaaaaccacagtaagacaactcaatatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttctccacat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6968854 attgccaacattttgaatccatcaaaaccacagtaagacaactcaatatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttctccacat 6968755  T
Q  301 agttagtagtaaatataatcaatctctcaccagtactagcagaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgacttgctttgtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6968754 agttagtagtaaatataatcaatctctcaccagtactagcagaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgacttgctttgtt 6968655  T
Q  401 cttttctttatctgctgcttgtaatccctgcagagaagcagcagcaacttgattcacctcctcatttttctcctctttttctttgtcattctcagaatct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6968654 cttttctttatctgctgcttgtaatccctgcagagaagcagcagcaacttgattcacctcctcatttttctcctctttttctttgtcattctccgaatct 6968555  T
Q  501 gtcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcat 600  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6968554 gtcttcctctgaccggtaagatcaagcgaacaatcaatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcat 6968455  T
Q  601 tatttttcacattggttaactcaatgtcataaatatcatacttcaaaaagttagcaatagcagcaactagtgatgat 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6968454 tatttttcacattggttaactcaatgtcataaatatcatacttcaaaaaattagcaatagcagcaactagtgatgat 6968378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 1000205 - 1000502
Alignment:
Q  1 cttctttcttggctttcatctcagcttcttccttggaggttctaagtgcttggatcaa--cctctccaatgatgcctcaacatcttcatcagctacctta 98  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  1000205 cttctttcttagctttcatctcagcctcttccttagaggttctaagtgcttggatcaaagcctctccaatgatgcctcaacatcttcat-agctacctta 1000303  T
Q  99 ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagactcaatactcagataat 198  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| | ||| ||||| ||||||||||||||| |||||||||||||||     
T  1000304 ggcatcaagttttcagcaacatcagcctgagttatgttggtctcttccaacaagcatcgaaccgtcttgaacaaaggatgagattcaatactcagataac 1000403  T
Q  199 tcattgccaacattttgaatccatcaaaaccacagtaagacaactcaat----atgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttc 293  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1000404 tcattgctagcattttgaatccatcaaaaccacaataagacaactcaatatgcatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttc 1000502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 40 - 391
Target Start/End: Complemental strand, 2178306 - 2177955
Alignment:
Q  40 ttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcatcagctaccttaggcatcaagttttcagcaacatcagccggagtcatgttagt 139  Q
    ||||||||||||| |||||||||  |||||  | | |||||||||||| | ||||||| |||||||| ||||||||||||||||| || ||||| |||||    
T  2178306 ttctaagtgcttgaatcaacctcaacaatggagtcgcaacatcttcattatctacctttggcatcaaattttcagcaacatcagctggtgtcatattagt 2178207  T
Q  140 ctcttccaacaagcgttgaatcgtctcgaacaaaggatgagactcaatactcagataattcattgccaacattttgaatccatcaaaaccacagtaagac 239  Q
    |||| ||||||||| |  |||| | |||||||||  |||||| |||| ||||||||| ||| ||||||||||||||||||||||||||| ||| |||| |    
T  2178206 ctctaccaacaagcatgcaatcttgtcgaacaaaaaatgagattcaagactcagatacttcgttgccaacattttgaatccatcaaaacaacaataaggc 2178107  T
Q  240 aactcaatatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttctccacatagttagtagtaaatataatcaatctctcaccagtactag 339  Q
    || || ||| |||||||||||| ||| |||| ||| ||||| ||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||||    
T  2178106 aattcgataagcatgtccattcttcctcgacaaattaaagcatgatcaagtttctccgcatagttagtagtgaatataattaacctctcaccagtactag 2178007  T
Q  340 cagaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgact 391  Q
    | |||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  2178006 ctgaccaaatcccatcaatgaaattcaacaatcctggaagtgttatctgact 2177955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 27 - 340
Target Start/End: Original strand, 51316041 - 51316361
Alignment:
Q  27 tcttccttggaggttctaagtgctt--ggatcaacctctccaatgatgcctcaacatcttcatcagctaccttaggcatcaagttttcagcaacatcagc 124  Q
    |||||||| ||| ||||||| ||||  | ||||||||||||||||| | |||||||||||||| || |||||||||||||||||||| ||||||||||||    
T  51316041 tcttccttagagcttctaagggcttttgtatcaacctctccaatgaggtctcaacatcttcattagataccttaggcatcaagtttttagcaacatcagc 51316140  T
Q  125 cggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagactcaatactcagataattcattgccaacattttgaatccatca 224  Q
     || ||||| ||||||||||||||||||| |  ||||||||||| ||||  |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  51316141 tggtgtcatattagtctcttccaacaagcatctaatcgtctcgagcaaaaaatgagattcaagactcagataattcattgccaacattttgaatccatca 51316240  T
Q  225 aaaccacagtaagacaactcaatatgcatgtcc-----attcgtccacgacgaatcaaagcttgatcaagtttctccacatagttagtagtaaatataat 319  Q
    |||||||| |||||||| ||||||||||| |||     |||| ||  | |||||| | ||| |||| |||||||||||||||||||||||||||||||||    
T  51316241 aaaccacaataagacaattcaatatgcatatccattatattcttcatctacgaattagagcatgattaagtttctccacatagttagtagtaaatataat 51316340  T
Q  320 caatctctcaccagtactagc 340  Q
    ||||||||||  |||||||||    
T  51316341 caatctctcatgagtactagc 51316361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 487 - 594
Target Start/End: Complemental strand, 2177906 - 2177799
Alignment:
Q  487 cattctcagaatctgtcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagttt 586  Q
    ||||||||||| |||||||||| | ||| |||||||||||  || |||| ||| |||| ||||||||||| || | |||  |||||||||||||||||||    
T  2177906 cattctcagaacctgtcttcctttaacctgtaagatcaagcaaagaatcaatagcttcaataacaacaaccgattcacttttgattccaatcaaaagttt 2177807  T
Q  587 ccttaact 594  Q
    ||||||||    
T  2177806 ccttaact 2177799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 616 - 677
Target Start/End: Original strand, 1000533 - 1000595
Alignment:
Q  616 ttaactcaatgtcataaatatcatacttc-aaaaagttagcaatagcagcaactagtgatgat 677  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||| |||| |||||||||||||    
T  1000533 ttaactcaatgtcataaatatcatacttcaaaaaaattagaaatggcagtaactagtgatgat 1000595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 603
Target Start/End: Complemental strand, 44396278 - 44396177
Alignment:
Q  502 tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcatt 601  Q
    ||||||| ||||| |||||||||||||||||||| || ||||| ||||||| || ||||||||| ||  |  |||||||||| ||||| ||||||| |||    
T  44396278 tcttcctttgacctgtaagatcaagtgaacaatcaatgtcttcaataacaataattgacttacttgtagtctcaatcaaaagcttcctcaactcagtatt 44396179  T
Q  602 at 603  Q
    ||    
T  44396178 at 44396177  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 2842843 - 2842791
Alignment:
Q  99 ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa 151  Q
    |||||||| ||||||||||||||||| || ||||| |||||||||||||||||    
T  2842843 ggcatcaaattttcagcaacatcagcaggtgtcatattagtctcttccaacaa 2842791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 386
Target Start/End: Complemental strand, 2829194 - 2829147
Alignment:
Q  339 gcagaccaaatcccatcaatgaaattcaacaatccagaaagtgttacc 386  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  2829194 gcagaccaaatcccatcaataaaattcaacaaaccagaaagagttacc 2829147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 2833023 - 2833073
Alignment:
Q  342 gaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgactt 392  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||| ||||    
T  2833023 gaccaaattccatcaatgaaattcaacaaaccagaaagagttaccttactt 2833073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 2829437 - 2829385
Alignment:
Q  99 ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa 151  Q
    |||||||| ||||||||||||||||| || ||||| ||||||| |||||||||    
T  2829437 ggcatcaaattttcagcaacatcagcaggtgtcatattagtcttttccaacaa 2829385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 2860462 - 2860519
Alignment:
Q  502 tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactga 559  Q
    ||||||||||||||||||| || || |||||||| |||||||| ||||| | ||||||    
T  2860462 tcttcctctgaccggtaagctcgagagaacaatcaatatcttcaataacgataactga 2860519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 2865841 - 2865898
Alignment:
Q  502 tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactga 559  Q
    ||||||| ||||||||||| ||||| |||||||| |||||||| ||||| | ||||||    
T  2865841 tcttcctttgaccggtaagctcaagagaacaatcaatatcttcaataacgataactga 2865898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 2832777 - 2832829
Alignment:
Q  99 ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa 151  Q
    |||||||| || |||||||||||||| || ||||| ||||||||| |||||||    
T  2832777 ggcatcaaattctcagcaacatcagcaggtgtcatattagtctctcccaacaa 2832829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 2909484 - 2909536
Alignment:
Q  99 ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa 151  Q
    |||||||| || |||||||||||||| || ||||| ||||||||| |||||||    
T  2909484 ggcatcaaattctcagcaacatcagcaggtgtcatattagtctctcccaacaa 2909536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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