View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_low_20 (Length: 364)

Name: NF3648_low_20
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_low_20
NF3648_low_20
[»] chr6 (10 HSPs)
chr6 (48-283)||(31565162-31565397)
chr6 (117-283)||(33414293-33414459)
chr6 (127-283)||(33383760-33383916)
chr6 (127-258)||(33351400-33351530)
chr6 (173-283)||(33292802-33292912)
chr6 (141-244)||(33258067-33258170)
chr6 (207-279)||(33269355-33269427)
chr6 (217-257)||(31567428-31567468)
chr6 (58-101)||(33414211-33414254)
chr6 (58-113)||(33351305-33351363)
[»] chr2 (2 HSPs)
chr2 (117-283)||(17445747-17445910)
chr2 (58-99)||(17445951-17445992)
[»] scaffold0428 (1 HSPs)
scaffold0428 (141-244)||(2188-2291)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 48 - 283
Target Start/End: Complemental strand, 31565397 - 31565162
Alignment:
Q  48 actctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565397 actctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgc 31565298  T
Q  148 cgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaa 247  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565297 cgcacattaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaa 31565198  T
Q  248 gctctcctaatctctttgagattcttccctcaacaa 283  Q
    ||||||||||||||||||||||||||||||||||||    
T  31565197 gctctcctaatctctttgagattcttccctcaacaa 31565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 117 - 283
Target Start/End: Original strand, 33414293 - 33414459
Alignment:
Q  117 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 216  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  33414293 tgtttctccgagagtgaaccgaacaaaacgccgcactttaatgttctctccaatagcagctatactttgcctcaccaagtctttcactacaacactgtca 33414392  T
Q  217 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 283  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33414393 tccttaataaaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaa 33414459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 33383760 - 33383916
Alignment:
Q  127 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 226  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33383760 agagtgaaccgaacaaaacgcccagctttaatgttctcgccaatggcagctatactttgcctcaccaagtctttcactgaaacactgtcatccttaatga 33383859  T
Q  227 aaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 283  Q
    ||||||||| || |||||| || |||  ||| |||||||||||||||||||||||||    
T  33383860 aaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaa 33383916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 127 - 258
Target Start/End: Original strand, 33351400 - 33351530
Alignment:
Q  127 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 226  Q
    |||||||||||||||||||||||| |  |||||||||| |||||  |||||||||||||||||||||||||||| |||| ||||||||| |||||||| |    
T  33351400 agagtgaaccgaacaaaacgccgcgctttaatgttctctccaataccagctatactttgcctcaccaagtctttcactacaacactgtcgtccttaat-a 33351498  T
Q  227 aaggctgctctagaagagcaagctctcctaat 258  Q
    |||| ||| |||||||||||||||||||||||    
T  33351499 aaggatgccctagaagagcaagctctcctaat 33351530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 33292802 - 33292912
Alignment:
Q  173 cagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattct 272  Q
    ||||||||||||||||| |||||||||| |   ||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||    
T  33292802 cagctatactttgcctctccaagtctttcaaagaaacactgtcatccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattct 33292901  T
Q  273 tccctcaacaa 283  Q
    |||||||||||    
T  33292902 tccctcaacaa 33292912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 33258067 - 33258170
Alignment:
Q  141 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 240  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  33258067 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 33258166  T
Q  241 agag 244  Q
    ||||    
T  33258167 agag 33258170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 33269355 - 33269427
Alignment:
Q  207 aacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctca 279  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  33269355 aacactgtcatccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctca 33269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 31567468 - 31567428
Alignment:
Q  217 tccttaatgaaaggctgctctagaagagcaagctctcctaa 257  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31567468 tccttaatgaaaggctgctctagaagagaaagctctcctaa 31567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 33414211 - 33414254
Alignment:
Q  58 atacttcttcctatgaaaatgcaacaaatacttttcttgaaaac 101  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||    
T  33414211 atacttcttcctatgaaaatgcaacgattacttctcttgaaaac 33414254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 33351305 - 33351363
Alignment:
Q  58 atacttcttcctatgaaaatgca---acaaatacttttcttgaaaactttttaagctat 113  Q
    |||||||||||||||||||||||   |||||||||| |||||||| | || ||||||||    
T  33351305 atacttcttcctatgaaaatgcaaagacaaatacttgtcttgaaagcgttgtaagctat 33351363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 117 - 283
Target Start/End: Complemental strand, 17445910 - 17445747
Alignment:
Q  117 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 216  Q
    |||||||||  ||||||||| |||||||||||||||  |||    ||| ||||| ||||||||||||||||||||||| | ||| ||| |||| ||||||    
T  17445910 tgtttctccgggagtgaacctaacaaaacgccgcactttaaa---ctctccaatagcagctatactttgcctcaccaaatatttcactgaaacgctgtca 17445814  T
Q  217 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 283  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  17445813 tccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaa 17445747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 17445992 - 17445951
Alignment:
Q  58 atacttcttcctatgaaaatgcaacaaatacttttcttgaaa 99  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  17445992 atacttcttcctatgaaaatgcaacaaatacttgtcttgaaa 17445951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 2188 - 2291
Alignment:
Q  141 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 240  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  2188 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 2287  T
Q  241 agag 244  Q
    ||||    
T  2288 agag 2291  T

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