View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_low_24 (Length: 360)

Name: NF3648_low_24
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_low_24
NF3648_low_24
[»] chr8 (16 HSPs)
chr8 (114-277)||(12178858-12179021)
chr8 (114-277)||(12423286-12423449)
chr8 (114-277)||(12190553-12190716)
chr8 (114-277)||(12434981-12435144)
chr8 (20-79)||(12189475-12189534)
chr8 (20-79)||(12433903-12433962)
chr8 (297-342)||(12190742-12190787)
chr8 (297-342)||(12435170-12435215)
chr8 (297-341)||(12179050-12179094)
chr8 (297-341)||(12423478-12423522)
chr8 (119-177)||(5568633-5568691)
chr8 (119-177)||(13164330-13164388)
chr8 (114-180)||(5598526-5598592)
chr8 (114-180)||(5636683-5636749)
chr8 (139-180)||(5572753-5572794)
chr8 (131-180)||(6313834-6313883)
[»] chr7 (1 HSPs)
chr7 (30-79)||(16332963-16333012)
[»] chr1 (1 HSPs)
chr1 (32-79)||(3461359-3461406)
[»] chr5 (1 HSPs)
chr5 (217-275)||(16473605-16473663)
[»] chr6 (1 HSPs)
chr6 (30-79)||(30148135-30148184)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 7e-71; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 12178858 - 12179021
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggtttcgatgtggtttctacgcaaagcttcatgaag 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  12178858 ctttaattgctttttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtaggtttcgatgtggtttttacacaaagccgcatgaag 12178957  T
Q  214 aaagcttgtaaaattggtgcgagtatcttcccctctaaaactgataaaaacatcgtgttttttg 277  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12178958 aaagcttgtaaaattggtgcgagtatcctcccctctaaaactgataaaaacatcgtgttttttg 12179021  T

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Target: chr8; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 12423286 - 12423449
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggtttcgatgtggtttctacgcaaagcttcatgaag 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  12423286 ctttaattgctttttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtaggtttcgatgtggtttttacacaaagccgcatgaag 12423385  T
Q  214 aaagcttgtaaaattggtgcgagtatcttcccctctaaaactgataaaaacatcgtgttttttg 277  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12423386 aaagcttgtaaaattggtgcgagtatcctcccctctaaaactgataaaaacatcgtgttttttg 12423449  T

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Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 12190553 - 12190716
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggtttcgatgtggtttctacgcaaagcttcatgaag 213  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  12190553 ctttaattgctctttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtaggtttcgatgtggtttttacacaaagccgcatgaag 12190652  T
Q  214 aaagcttgtaaaattggtgcgagtatcttcccctctaaaactgataaaaacatcgtgttttttg 277  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12190653 aaagcttgtaaaattggtgcgagtatcctcccctctaaaactgataaaaacatcgtgttttttg 12190716  T

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Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 12434981 - 12435144
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggtttcgatgtggtttctacgcaaagcttcatgaag 213  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  12434981 ctttaattgctctttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtaggtttcgatgtggtttttacacaaagccgcatgaag 12435080  T
Q  214 aaagcttgtaaaattggtgcgagtatcttcccctctaaaactgataaaaacatcgtgttttttg 277  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12435081 aaagcttgtaaaattggtgcgagtatcctcccctctaaaactgataaaaacatcgtgttttttg 12435144  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 12189475 - 12189534
Alignment:
Q  20 gatgtaaggttttgtataaacgatttgattgctaatgaactgctgtaagcatatttttct 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12189475 gatgtaaggttttgtataaacgatttgattgctaatgaactgctgtaagcgtatttttct 12189534  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 12433903 - 12433962
Alignment:
Q  20 gatgtaaggttttgtataaacgatttgattgctaatgaactgctgtaagcatatttttct 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12433903 gatgtaaggttttgtataaacgatttgattgctaatgaactgctgtaagcgtatttttct 12433962  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 12190742 - 12190787
Alignment:
Q  297 ccatagctatctttgaatgtttatgctttggttgtggaagatacac 342  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  12190742 ccatagccatctttgaatgtttatgctttggttgtggaagatacac 12190787  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 12435170 - 12435215
Alignment:
Q  297 ccatagctatctttgaatgtttatgctttggttgtggaagatacac 342  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  12435170 ccatagccatctttgaatgtttatgctttggttgtggaagatacac 12435215  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 12179050 - 12179094
Alignment:
Q  297 ccatagctatctttgaatgtttatgctttggttgtggaagataca 341  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  12179050 ccataactatctttgaatgtttatgctttggttgtggaagataca 12179094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 12423478 - 12423522
Alignment:
Q  297 ccatagctatctttgaatgtttatgctttggttgtggaagataca 341  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  12423478 ccataactatctttgaatgtttatgctttggttgtggaagataca 12423522  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 5568691 - 5568633
Alignment:
Q  119 attgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgta 177  Q
    |||||||| |||||||||  |||||| || |||||||| ||||||||||||||||||||    
T  5568691 attgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgta 5568633  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 13164388 - 13164330
Alignment:
Q  119 attgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgta 177  Q
    |||||||| | ||||||| ||||||| || ||||||||||||||||| |||||||||||    
T  13164388 attgctttctgaagttctccccaaacttcatctcctttttcgatcctgtagtctatgta 13164330  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 5598526 - 5598592
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggt 180  Q
    |||| ||||||||  ||||||||  |||||| || |||||||| ||||||||||| |||||||||||    
T  5598526 ctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctataatctatgtaggt 5598592  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 5636749 - 5636683
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggt 180  Q
    |||| ||||||||  ||||||||  |||||| || |||||||| ||||||||||| |||||||||||    
T  5636749 ctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctataatctatgtaggt 5636683  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 5572794 - 5572753
Alignment:
Q  139 ccaaacctcttctcctttttcgatcctatagtctatgtaggt 180  Q
    |||||| || |||||||||| |||||||||||||||||||||    
T  5572794 ccaaacttcatctcctttttggatcctatagtctatgtaggt 5572753  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 6313834 - 6313883
Alignment:
Q  131 agttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggt 180  Q
    |||||| ||||||| || |||||||| |||||||| ||||||||||||||    
T  6313834 agttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggt 6313883  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 16332963 - 16333012
Alignment:
Q  30 tttgtataaacgatttgattgctaatgaactgctgtaagcatatttttct 79  Q
    ||||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  16332963 tttgtataaacgatttgattgctaatgaaatgctataagcatacttttct 16333012  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 3461359 - 3461406
Alignment:
Q  32 tgtataaacgatttgattgctaatgaactgctgtaagcatatttttct 79  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||    
T  3461359 tgtataaacgatttgattgctaatgaaatgttataagcatatttttct 3461406  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 16473605 - 16473663
Alignment:
Q  217 gcttgtaaaattggtgcgagtatcttcccctctaaaactgataaaaacatcgtgttttt 275  Q
    |||||| |||||| |||||||||| || |||||||||||||||||||| ||||| ||||    
T  16473605 gcttgtgaaattgttgcgagtatcctcacctctaaaactgataaaaacttcgtgctttt 16473663  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 30148135 - 30148184
Alignment:
Q  30 tttgtataaacgatttgattgctaatgaactgctgtaagcatatttttct 79  Q
    ||||||||||||| ||||||||||||||| |||| ||||| || ||||||    
T  30148135 tttgtataaacgagttgattgctaatgaaatgctataagcttaattttct 30148184  T

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