View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_low_25 (Length: 356)

Name: NF3648_low_25
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_low_25
NF3648_low_25
[»] chr8 (3 HSPs)
chr8 (6-341)||(16851969-16852314)
chr8 (203-236)||(30585118-30585151)
chr8 (202-246)||(13824359-13824403)
[»] chr7 (1 HSPs)
chr7 (202-250)||(43434509-43434557)
[»] chr6 (4 HSPs)
chr6 (203-252)||(34406423-34406472)
chr6 (202-234)||(1960345-1960377)
chr6 (207-263)||(4382831-4382887)
chr6 (205-233)||(10216808-10216836)
[»] chr1 (2 HSPs)
chr1 (203-263)||(3523373-3523433)
chr1 (203-254)||(16920474-16920525)
[»] chr4 (2 HSPs)
chr4 (203-238)||(51238017-51238052)
chr4 (202-238)||(23817985-23818021)
[»] chr3 (2 HSPs)
chr3 (203-250)||(43033122-43033169)
chr3 (202-243)||(31652450-31652491)
[»] chr2 (1 HSPs)
chr2 (203-264)||(30289791-30289852)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 6 - 341
Target Start/End: Complemental strand, 16852314 - 16851969
Alignment:
Q  6 cacagataaacgaacaaccacaaaacaaatttcataatataaaatgcaaaatgacgactcagtttcaagtttctacatcctaagataaacaaggtactaa 105  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16852314 cacaaataaacgaacaaccactaaacaaatttcataatataaaatgcaaaatgacgactcagtttcaagtttctacatcctaagataaacaaggtactaa 16852215  T
Q  106 ccaatctatattacataattcatgtaccactgacacttcaaatggaagacgtgttatgtgtttgacacgttttgaattgatacttgttatcattacatta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  16852214 ccaatctatattacataattcatgtaccactgacacttcaaatggaagacgtgttctgtgtctgacacgttttgaattgatacttattatcattacatta 16852115  T
Q  206 cattcaatcacttacattttcttaaattattgtcggtgtctacgtatcaatgtcgtgtcagag----------tatgataaaataaataaattacaaaac 295  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          |||||||||||||||||||||||||||    
T  16852114 cattcaatcacttacattttcttaaattattgtcagtgtctacgtatcaatgtcgtgtcagagcttcagagattatgataaaataaataaattacaaaac 16852015  T
Q  296 caattatcttcaactttaatgataatcagtttatcagcatataact 341  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  16852014 caattatcatcaactttaatgataatcagttaatcagcatataact 16851969  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 30585118 - 30585151
Alignment:
Q  203 ttacattcaatcacttacattttcttaaattatt 236  Q
    |||||||||||||||| |||||||||||||||||    
T  30585118 ttacattcaatcactttcattttcttaaattatt 30585151  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 13824403 - 13824359
Alignment:
Q  202 attacattcaatcacttacattttcttaaattattgtcggtgtct 246  Q
    ||||||||||||||||| || ||||||||||| || |||||||||    
T  13824403 attacattcaatcacttccactttcttaaatttttatcggtgtct 13824359  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 43434557 - 43434509
Alignment:
Q  202 attacattcaatcacttacattttcttaaattattgtcggtgtctacgt 250  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  43434557 attatattcaatcactttcattttcttaaattattatcggtgtctacgt 43434509  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 34406472 - 34406423
Alignment:
Q  203 ttacattcaatcacttacattttcttaaattattgtcggtgtctacgtat 252  Q
    |||||||||||||||| ||||||||||||||||  | |||||||||||||    
T  34406472 ttacattcaatcactttcattttcttaaattatgataggtgtctacgtat 34406423  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 1960345 - 1960377
Alignment:
Q  202 attacattcaatcacttacattttcttaaatta 234  Q
    ||||||||||||||||| |||||||||||||||    
T  1960345 attacattcaatcactttcattttcttaaatta 1960377  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 4382887 - 4382831
Alignment:
Q  207 attcaatcacttacattttcttaaattattgtcggtgtctacgtatcaatgtcgtgt 263  Q
    ||||||| |||| ||||||||| ||||||| ||||||||||| | ||| ||||||||    
T  4382887 attcaattactttcattttctttaattattatcggtgtctacatgtcattgtcgtgt 4382831  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 10216808 - 10216836
Alignment:
Q  205 acattcaatcacttacattttcttaaatt 233  Q
    |||||||||||||||||||||||||||||    
T  10216808 acattcaatcacttacattttcttaaatt 10216836  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 3523433 - 3523373
Alignment:
Q  203 ttacattcaatcacttacattttcttaaattattgtcggtgtctacgtatcaatgtcgtgt 263  Q
    ||||||||||||||||  ||||| | |||||||| ||||||||||||| ||| ||||||||    
T  3523433 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 3523373  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 16920474 - 16920525
Alignment:
Q  203 ttacattcaatcacttacattttcttaaattattgtcggtgtctacgtatca 254  Q
    ||||||||||| |||| |||||| | |||||||| |||||||||||||||||    
T  16920474 ttacattcaattacttccattttttaaaattattctcggtgtctacgtatca 16920525  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 51238017 - 51238052
Alignment:
Q  203 ttacattcaatcacttacattttcttaaattattgt 238  Q
    |||||||||||||||| |||||||||||||||||||    
T  51238017 ttacattcaatcacttccattttcttaaattattgt 51238052  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 23817985 - 23818021
Alignment:
Q  202 attacattcaatcacttacattttcttaaattattgt 238  Q
    |||| |||||||||||| |||||||||||||||||||    
T  23817985 attatattcaatcactttcattttcttaaattattgt 23818021  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 43033122 - 43033169
Alignment:
Q  203 ttacattcaatcacttacattttcttaaattattgtcggtgtctacgt 250  Q
    ||||||||||| |||||||||||| ||||||||| || ||||||||||    
T  43033122 ttacattcaattacttacattttcctaaattattttcagtgtctacgt 43033169  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 31652491 - 31652450
Alignment:
Q  202 attacattcaatcacttacattttcttaaattattgtcggtg 243  Q
    |||||||||||||||||  |||||||||||||||| ||||||    
T  31652491 attacattcaatcacttctattttcttaaattattatcggtg 31652450  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 30289852 - 30289791
Alignment:
Q  203 ttacattcaatcacttacattttcttaaattattgtcggtgtctacgtatcaatgtcgtgtc 264  Q
    ||||||||||| ||| ||||||||||||||||||  | |||||||| | ||| |||||||||    
T  30289852 ttacattcaattactcacattttcttaaattattaccagtgtctacatgtcagtgtcgtgtc 30289791  T

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