View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_low_26 (Length: 353)

Name: NF3648_low_26
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_low_26
NF3648_low_26
[»] chr8 (10 HSPs)
chr8 (89-336)||(16790894-16791136)
chr8 (92-334)||(16792802-16793045)
chr8 (2-90)||(16791184-16791272)
chr8 (147-261)||(16617239-16617353)
chr8 (93-261)||(16629563-16629734)
chr8 (93-261)||(16638444-16638615)
chr8 (147-248)||(16629268-16629369)
chr8 (147-248)||(16638149-16638250)
chr8 (195-238)||(15110408-15110451)
chr8 (187-318)||(3574079-3574210)
[»] chr4 (1 HSPs)
chr4 (124-236)||(38877741-38877856)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 89 - 336
Target Start/End: Complemental strand, 16791136 - 16790894
Alignment:
Q  89 actgacctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattaca---attattgatgcattttcatgagcaagatagtgacttgcaat 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  16791136 actgacctttattgttcttgaaggtgaagtcttgccactaaagtatttaaattacatttattattgatgcattttcatgagcaagatagtgacttgcaat 16791037  T
Q  186 tatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttggtactcctaacgtttgtgctagaacgtgtgacaatttcaattagtt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  16791036 tatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttg--------cacgtttgtgctagaacgtgtgacaatttcaattagtt 16790945  T
Q  286 cactcacattgcagaatctgactcgaattcattcaccgtgaaatgaaaatg 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16790944 cactcacattgcagaatctgactcgaattcattcaccgtgaaatgaaaatg 16790894  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 92 - 334
Target Start/End: Complemental strand, 16793045 - 16792802
Alignment:
Q  92 gacctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaat---tattgatgcattttcatgagcaagatagtgacttgcaattat 188  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |   ||||||||||| ||||||||||||||  ||||||||||||||    
T  16793045 gacctttattgttctcgaaggcgaagtcttgccactaaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattat 16792946  T
Q  189 ttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttggtactcctaacgtttgtgctagaacgtgtgacaatttcaattagttcac 288  Q
    ||||| ||||||||| ||||| ||||||||||||| |||||||||| |||||||||||   ||||  |||||||| ||| |||||||||||| |||||||    
T  16792945 ttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacttttggtactcc--gcgttaatgctagaatgtgcgacaatttcaatcagttcac 16792848  T
Q  289 tcacattgcagaatctgactcgaattcattcaccgtgaaatgaaaa 334  Q
     ||| |||||||||| ||||||||||||||| || |||||||||||    
T  16792847 ccacgttgcagaatcggactcgaattcattcgccatgaaatgaaaa 16792802  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 16791272 - 16791184
Alignment:
Q  2 tgattgatcattctgacattttgcttggatcgatgagttgggaccaaaggaaaggaaaatcatcataaaaacatgaagttgccatagac 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16791272 tgattgatcattctgacattttgcttggatcgatgagttgggaccaaaggaaaggaaaatcatcataaaaacaagaagttgccatagac 16791184  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 16617353 - 16617239
Alignment:
Q  147 tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttggtactcc 246  Q
    |||||||| |||||||| ||||||||  ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  16617353 tattgatgtattttcatcagcaagattatgacttgcaatgatttgttcccacaggatggaaaatgcctcgcagctttgttgcaaccacctttgatactcc 16617254  T
Q  247 taacgtttgtgctag 261  Q
    |  ||||||||||||    
T  16617253 tggcgtttgtgctag 16617239  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 261
Target Start/End: Complemental strand, 16629734 - 16629563
Alignment:
Q  93 acctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatt 189  Q
    |||||||||  || |||||||| ||||| ||||||||||| ||| || || | ||   |||||||||||||||| ||| ||||  ||||||||||| |||    
T  16629734 acctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaatgatt 16629635  T
Q  190 tgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttggtactcctaacgtttgtgctag 261  Q
    |||| ||||||||| |||||||| || |  ||||| | |||||||||||| ||||||||  |||| ||||||    
T  16629634 tgttcccacaggatggaaaatgcgtcccgtctttgatccaaccacctttgatactcctactgtttctgctag 16629563  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 261
Target Start/End: Complemental strand, 16638615 - 16638444
Alignment:
Q  93 acctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatt 189  Q
    |||||||||  || |||||||| ||||| ||||||||||| ||| || || | ||   |||||||||||||||| ||| ||||  ||||||||||| |||    
T  16638615 acctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaatgatt 16638516  T
Q  190 tgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttggtactcctaacgtttgtgctag 261  Q
    |||| ||||||||| |||||||| || |  ||||| | |||||||||||| ||||||||  |||| ||||||    
T  16638515 tgttcccacaggatggaaaatgcgtcccgtctttgatccaaccacctttgatactcctactgtttctgctag 16638444  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 16629369 - 16629268
Alignment:
Q  147 tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttggtactcc 246  Q
    ||||||||||||||| |  |||||||  ||||||||||| ||||||| ||||||||| ||| |||| ||||  ||||| | ||||| |||||||||||||    
T  16629369 tattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaatatgcgtcgcgtctttgatccaaccgcctttggtactcc 16629270  T
Q  247 ta 248  Q
    ||    
T  16629269 ta 16629268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 16638250 - 16638149
Alignment:
Q  147 tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttggtactcc 246  Q
    ||||||||||||||| |  |||||||  ||||||||||| ||||||| ||||||||| ||| |||| ||||  ||||| | ||||| |||||||||||||    
T  16638250 tattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaatatgcgtcgcgtctttgatccaaccgcctttggtactcc 16638151  T
Q  247 ta 248  Q
    ||    
T  16638150 ta 16638149  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 15110408 - 15110451
Alignment:
Q  195 ccacaggatagaaaatgcctcgcagctttgttgcaaccaccttt 238  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  15110408 ccacaggatggaaaatgcatcgcagctttgttgcaaccaccttt 15110451  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 318
Target Start/End: Complemental strand, 3574210 - 3574079
Alignment:
Q  187 atttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttggtactcctaacgtttgtgctagaacgtgtgacaatttcaattagttc 286  Q
    ||||||| ||||||||| |||||||  ||||  ||||| | |||||||||||| ||||||||  |||| |||||| | |||| ||  ||||||| | |||    
T  3574210 atttgttcccacaggatggaaaatgtgtcgcgtctttgatccaaccacctttgatactcctagtgtttctgctagcatgtgtaacggtttcaatcaattc 3574111  T
Q  287 actcacattgcagaatctgactcgaattcatt 318  Q
    ||| ||| ||| ||||| |||  |||||||||    
T  3574110 actgacactgccgaatcagacatgaattcatt 3574079  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 38877856 - 38877741
Alignment:
Q  124 cactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagc 220  Q
    ||||||||| ||||| ||||| ||   |||||||||| ||||| ||||||||  ||||||| ||| ||||  | |||||| || ||||||||||| ||||    
T  38877856 cactaaagtgtttaatttacatttgacattgatgcatgttcatcagcaagattctgacttgtaatgatttactcccacagcatggaaaatgcctcacagc 38877757  T
Q  221 tttgttgcaaccacct 236  Q
    ||||||||||||||||    
T  38877756 tttgttgcaaccacct 38877741  T

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