View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_low_28 (Length: 342)
Name: NF3648_low_28
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_28 |
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| [»] scaffold0690 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 29 - 308
Target Start/End: Complemental strand, 9337047 - 9336774
Alignment:
| Q |
29 |
tagaaaagtgaatttatctcacctgtagaggataaaataatcttctttgatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatg |
128 |
Q |
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| T |
9337047 |
tagaaaagtgaatttatctcacctgcagaggataaaataatcttctttgatttgttcttgcatttaaaacatccattgtcaagatttgtttccgaccatg |
9336948 |
T |
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| Q |
129 |
ataatgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaaactcgttgagacaatttggtgcagaa |
228 |
Q |
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| T |
9336947 |
ataatgagattgaggtttgtagtatcgtatacccatta---gaatattctg---ccggaagaataaggggtgaaactcgttgagacaatttggtgcagaa |
9336854 |
T |
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| Q |
229 |
tacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgctcatctc |
308 |
Q |
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| T |
9336853 |
tacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgctcatctc |
9336774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 32 - 309
Target Start/End: Complemental strand, 9363951 - 9363680
Alignment:
| Q |
32 |
aaaagtgaatttatctcacctgtagaggataaaataatcttctttgatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatgata |
131 |
Q |
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| T |
9363951 |
aaaagtgaatttatctcacctgcagaggataaaattatcttctttgatttgttcttgcatttaaaacatccattgtcaagatttgtttccgaccatgata |
9363852 |
T |
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| Q |
132 |
atgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatac |
231 |
Q |
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| T |
9363851 |
atgagattgaggtttgtcgtatcgtatacccatt---agaatattctg---ccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatac |
9363758 |
T |
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| Q |
232 |
aaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgctcatctcc |
309 |
Q |
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| T |
9363757 |
aagattcaatttaaccatatcgtcgtcaaatgctgccatataaattggacaagaaatcatgtcctgctgctcatctcc |
9363680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 9243289 - 9243405
Alignment:
| Q |
194 |
aggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtc-aaccatatcatcctcagatgctgccatataaattggacaagaaatcagg |
292 |
Q |
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| T |
9243289 |
aggggtgaaactcgttgagataatttggtacaggatacaaggtttaaatttaactatatcgttgtcaaatgctgccatataaattggacaagaaatcatg |
9243388 |
T |
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| Q |
293 |
tcctgctgctcatctcc |
309 |
Q |
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| T |
9243389 |
tcctgctgctcagctcc |
9243405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 9243178 - 9243277
Alignment:
| Q |
56 |
gaggataaaataatcttctttgatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatgataatgagattgaagtttgtcgtatcg |
155 |
Q |
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| T |
9243178 |
gaggataaaataatcttctttgatttattgctgcattttaagcatcctttgtcaaagtttgttttcgaccatgacaatgagatcgagttttgtcgtatcg |
9243277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 1099 - 851
Alignment:
| Q |
44 |
atctcacctgtagaggataaaataatcttcttt---gatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatgataatgagattg |
140 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
1099 |
atctcacctgcagaggataaaataatcttcttttttgatttgtgcttacattctaagcatcctttgtcaattgttgttcccgaccatgataataagattg |
1000 |
T |
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| Q |
141 |
aagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaa |
240 |
Q |
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| T |
999 |
agttttgttgtatc------ccat-atac--agattc---atccgaaagaataaggggagaaactcgttgagacaatttggtgcaggatacaaggttcaa |
912 |
T |
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| Q |
241 |
gtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgc |
301 |
Q |
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| T |
911 |
ttcaacgacatcatcgtaaaatcctgcaatataaattggacaagaaatcatatcctgctgc |
851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 44 - 301
Target Start/End: Original strand, 15911006 - 15911254
Alignment:
| Q |
44 |
atctcacctgtagaggataaaataatcttcttt---gatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatgataatgagattg |
140 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
15911006 |
atctcacctgcagaggataaaataatcttcttttttgatttgtgcttacattctaagcatcctttgtcaattgttgttcccgaccatgataataagattg |
15911105 |
T |
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| Q |
141 |
aagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaa |
240 |
Q |
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| T |
15911106 |
agttttgttgtatc------ccat-atac--agattc---atccgaaagaataaggggagaaactcgttgagacaatttggtgcaggatacaaggttcaa |
15911193 |
T |
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| Q |
241 |
gtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgc |
301 |
Q |
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| T |
15911194 |
ttcaacgacatcatcgtaaaatcctgcaatataaattggacaagaaatcatatcctgctgc |
15911254 |
T |
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