View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_low_33 (Length: 304)
Name: NF3648_low_33
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 1241054 - 1240761
Alignment:
| Q |
1 |
cagcaccaacacaatgttcctttgttacttcaaccatcttatgcaagatcaaaatccatgatctttgatgaactaagaaactttcggatatgtcttaaat |
100 |
Q |
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| T |
1241054 |
cagcaccaacacaatgttcctttgttacttcagccatcttatgcaagatcaaaatccatgatctttgatgaactaagaaactttcggatatgtcttaaat |
1240955 |
T |
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| Q |
101 |
ggtgtgctcttgatcactcatcttgtgttggaaaactcatttcttatgtttccttcatcttccttactttcattgttcctctcttcacaaccctatttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1240954 |
ggtgtgctcttgatcactcatcttgtgttggaaaactcatttcttatgtttccttcatcttccttactttcgttgttcctctcttcacaaccctatttgt |
1240855 |
T |
|
| Q |
201 |
tcaagtatctgcttcttctcctgaagttgatcctatctccttgaacaagcttgttcaaatacctgaatctgcacttgccatcatttccttcttc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1240854 |
tcaagtatctgcttcttctcctgaagttgatcctatctccttgaacaagcttgttcaaatacctgaatctgcacttgccatcatttccttcttc |
1240761 |
T |
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