View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3648_low_35 (Length: 282)
Name: NF3648_low_35
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 18925116 - 18925385
Alignment:
| Q |
1 |
ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttggaaacaatgtcacccttctcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
18925116 |
ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgtcacccttctcaat |
18925215 |
T |
|
| Q |
101 |
gactttaaccccgcactttggtttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaagttaaatataactttca |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
18925216 |
gactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagttaaatataactttca |
18925315 |
T |
|
| Q |
201 |
ttccaaacaccataaatcaatcaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc |
270 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18925316 |
ttccaaacaccataaatcaaccaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc |
18925385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 4667662 - 4667396
Alignment:
| Q |
1 |
ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttggaaacaatgtcacccttctcaaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||| |||| ||| | |||||||||||| |
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| T |
4667662 |
ttttcttcgcctccatttttacccaacatcgtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttacccttctcaaa |
4667563 |
T |
|
| Q |
101 |
gactttaaccccgcactttggtttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaagttaaatataactttca |
200 |
Q |
| |
|
||||||| ||| |||||||| ||| ||||||||||||||||||||| ||||| || ||| || | | |||| | | ||||| || | ||||||||| |
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| T |
4667562 |
gactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaactagacgtaactttca |
4667463 |
T |
|
| Q |
201 |
ttccaaacaccataaatcaatcaaaggcttatgctttcatcaacggaattgagatcgtgtccatgcc |
267 |
Q |
| |
|
|||| || | || ||| |||| ||| |||| |||||||||||||||||||||||| ||||| ||||| |
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|
| T |
4667462 |
ttcccaaaaacacaaaccaattaaatgcttttgctttcatcaacggaattgagattgtgtctatgcc |
4667396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 4631626 - 4631379
Alignment:
| Q |
29 |
tcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttggaaacaatgtcacccttctcaaagactttaaccccgcactttggtttcaaa |
128 |
Q |
| |
|
||||||||| || ||||||||| |||||||||||||| ||| ||| |||| ||| | |||||||||||||||||||| ||| | |||||| || || |
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| T |
4631626 |
tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa |
4631527 |
T |
|
| Q |
129 |
acgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaagttaaatataactttcattcc---aaacac---cataaatcaatc |
222 |
Q |
| |
|
|||||| |||||||||||| ||||| || ||| | |||| |||| ||||||| |||| |||||||||||||| ||| || || ||| |||| |
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|
| T |
4631526 |
acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt |
4631427 |
T |
|
| Q |
223 |
aaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc |
270 |
Q |
| |
|
||| | || ||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
4631426 |
aaatggtttagctttcatcaacggaattgagattgtgtctatgccttc |
4631379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 4711607 - 4711715
Alignment:
| Q |
165 |
aaatgaaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggc---ttatgctttcatcaacggaattgagatcgtgtc |
261 |
Q |
| |
|
|||| ||||||| ||||||| ||| ||||||||||||||||||| ||||||||| ||||| | |||||||||||| |||||||| || || ||||| |
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| T |
4711607 |
aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc |
4711706 |
T |
|
| Q |
262 |
catgccttc |
270 |
Q |
| |
|
|||||||| |
|
|
| T |
4711707 |
tatgccttc |
4711715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4783206 - 4783255
Alignment:
| Q |
1 |
ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacct |
50 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
4783206 |
ttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacct |
4783255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4815635 - 4815684
Alignment:
| Q |
1 |
ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacct |
50 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
4815635 |
ttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacct |
4815684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4637578 - 4637533
Alignment:
| Q |
1 |
ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa |
46 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||||||||| |
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|
| T |
4637578 |
ttttcttcgtcttcatttttaccctacatcttatcaaaactttgaa |
4637533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4663414 - 4663369
Alignment:
| Q |
1 |
ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa |
46 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
4663414 |
ttttcttcgccttcatttttactcaacatcttataaaaactttgaa |
4663369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4864649 - 4864604
Alignment:
| Q |
1 |
ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa |
46 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
4864649 |
ttttgttcgtcttcatttttacccaacatcttatcaaaactttgaa |
4864604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 4637417 - 4637357
Alignment:
| Q |
165 |
aaatgaaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaa |
225 |
Q |
| |
|
|||| ||||||| ||| |||||||| |||||||||||||| |||| |||||| |||||||| |
|
|
| T |
4637417 |
aaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaa |
4637357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4644419 - 4644374
Alignment:
| Q |
1 |
ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa |
46 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| |||||| |
|
|
| T |
4644419 |
ttttcttcgcctttatttttaccctgcatcgtatcaaaattttgaa |
4644374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4696549 - 4696594
Alignment:
| Q |
1 |
ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa |
46 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| | |||||||||| |
|
|
| T |
4696549 |
ttttcttcgccttcatttttacccgacttcgtaccgaaactttgaa |
4696594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 4696730 - 4696833
Alignment:
| Q |
170 |
aaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggc---ttatgctttcatcaacggaattgagatcgtgtccatgc |
266 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| | || |||||| || ||||| | |||||||||||| |||||||| || | ||||| |||| |
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|
| T |
4696730 |
aaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgtcaatgc |
4696829 |
T |
|
| Q |
267 |
cttc |
270 |
Q |
| |
|
|||| |
|
|
| T |
4696830 |
cttc |
4696833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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