View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_low_36 (Length: 269)
Name: NF3648_low_36
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 35700351 - 35700115
Alignment:
| Q |
19 |
tctttgatagatcgtgcaaaaccctgcaatattttataacaatgcaatatttaatttcatacattttgttcaaaaataatcgaagagatcaatttaattt |
118 |
Q |
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| T |
35700351 |
tctttgataggtcgtgcaaaaccctgcaatattttataacaatgcaatatttaatttcatacattttgttcaaaaataatcgaagagatcaatttaattt |
35700252 |
T |
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| Q |
119 |
tgaattttatggtgcttacccggcactactataaggatcttttagtccattcgaaaaaataatgttgctaccaaacttttgaagaacccgttttatatcc |
218 |
Q |
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| T |
35700251 |
tgaattttatggtgcttacccggcactactataaggatcttttagtccattcgaaaaaataatgttgctaccaaacttttgaagaacccgttttatatcc |
35700152 |
T |
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| Q |
219 |
tgccattagtcaaaaccacaacaaaattaatttcttg |
255 |
Q |
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| T |
35700151 |
tgccattagtcaaaaccacaacaaaattaatttcttg |
35700115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 32485559 - 32485325
Alignment:
| Q |
24 |
gatagatcgtgcaaaaccctgcaatattttataacaatgcaatatttaatttcatacattttgttcaaaaataatcgaagagatcaatttaattttgaat |
123 |
Q |
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| T |
32485559 |
gatagatcgttcaaaaccctgaaaaatataaaaacaacacaatatttaattttataaagtttactcgaaaataaataaaga--tcaatttaattttagat |
32485462 |
T |
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| Q |
124 |
tttatggtgcttacccggcactactataaggatcttttagtccattcgaa-aaaataatgttgctaccaaacttttgaagaacccgttttatatcctgcc |
222 |
Q |
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| T |
32485461 |
attacggtgcttaccctccactactatacgggtcttttagtccattcgaaaaaaattatgttgctatcgaactttttaagaaccagctttattttatgtc |
32485362 |
T |
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| Q |
223 |
attagtcaaaaccacaacaaaattaatttcttgatgat |
260 |
Q |
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| T |
32485361 |
attagtc-acaccacaataaagttagtttcttaatgat |
32485325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 32481049 - 32480902
Alignment:
| Q |
106 |
atcaatttaattttgaattttatggtgcttacccggcactactataaggatcttttagtccattcgaa-aaaataatgttgctaccaaacttttgaagaa |
204 |
Q |
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|||||||||||||| |||||||| |||||||| |||||||||| || |||||||||||||||||| ||||| |||||||||||||| |||| ||||| |
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| T |
32481049 |
atcaatttaattttagattttatgatgcttacctc-cactactatacgggtcttttagtccattcgaaaaaaattatgttgctaccaaattttttaagaa |
32480951 |
T |
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| Q |
205 |
cccgttttatatcctgccattagtcaaaaccacaacaaaattaatttctt |
254 |
Q |
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| T |
32480950 |
ccagctttatattttgtcatttgtc-acaccacaaaaaagttaatttctt |
32480902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 31477272 - 31477360
Alignment:
| Q |
142 |
cactactataaggatcttttagtccattcgaaaaaataatgttgctaccaaacttttgaagaacccgttttatatcctgccattagtca |
230 |
Q |
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| T |
31477272 |
cactactatatggatctcttaggccatttgaaaaaatgatgttgctcccaaacctcttaagaaccaattgaatatcctgccattagtca |
31477360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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