View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_low_39 (Length: 253)

Name: NF3648_low_39
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_low_39
NF3648_low_39
[»] chr7 (9 HSPs)
chr7 (1-250)||(39332836-39333085)
chr7 (1-250)||(39569454-39569703)
chr7 (1-250)||(39552616-39552865)
chr7 (1-250)||(39344106-39344355)
chr7 (1-250)||(39358682-39358931)
chr7 (1-250)||(39543393-39543642)
chr7 (129-200)||(39585472-39585543)
chr7 (129-197)||(39579142-39579210)
chr7 (130-182)||(39593906-39593958)
[»] chr4 (2 HSPs)
chr4 (133-205)||(2882142-2882214)
chr4 (152-205)||(2871849-2871902)
[»] chr8 (1 HSPs)
chr8 (160-197)||(4494209-4494246)
[»] chr2 (3 HSPs)
chr2 (152-205)||(44215153-44215206)
chr2 (172-205)||(44238464-44238497)
chr2 (171-205)||(44227330-44227364)
[»] chr1 (1 HSPs)
chr1 (154-203)||(2166851-2166900)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 39333085 - 39332836
Alignment:
Q  1 agtttaagcagaaatttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatctctcttttcttgcatcccaaggttctctatatcgatct 100  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | ||| ||||    
T  39333085 agtttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatctttcttttcttgcatcccaaggttctcaacatcaatct 39332986  T
Q  101 cgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  39332985 cgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaaggatctgaattgcagcccatttaagagcttcttcatcatc 39332886  T
Q  201 ttcttggtggaaagaatgagaaaaaatctcagcagcatctctgctcctcc 250  Q
    | |||||||||||||||  ||||||||||| || ||||| ||| ||||||    
T  39332885 tccttggtggaaagaatttgaaaaaatctcggctgcatcactgttcctcc 39332836  T

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Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 39569454 - 39569703
Alignment:
Q  1 agtttaagcagaaatttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatctctcttttcttgcatcccaaggttctctatatcgatct 100  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||| |||||| ||||| ||||| ||||    
T  39569454 agtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttcttgcagcccaagcttctcaatatcaatct 39569553  T
Q  101 cgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatc 200  Q
    | | || | | ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  39569554 caacggcttccccttgaagtgaagtgagcaaacctttcctcaaacgcgcaaaagtaggaagattctgaattgcagcccacttaagagcttcttcatcatc 39569653  T
Q  201 ttcttggtggaaagaatgagaaaaaatctcagcagcatctctgctcctcc 250  Q
    ||||||||| |||||||  |||||||||||||| ||||| ||||||||||    
T  39569654 ttcttggtgaaaagaatttgaaaaaatctcagctgcatcactgctcctcc 39569703  T

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Target: chr7; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 39552616 - 39552865
Alignment:
Q  1 agtttaagcagaaatttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatctctcttttcttgcatcccaaggttctctatatcgatct 100  Q
    ||||| |||| ||| || |||||||| ||||||||||||||||||||||||||||| |||||| |  ||||||||| |||||||||||| | ||||||||    
T  39552616 agtttgagcaaaaacttttcattgtcttcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaacccaaggttctcaacatcgatct 39552715  T
Q  101 cgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatc 200  Q
    |  ||| | | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39552716 cagtggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatc 39552815  T
Q  201 ttcttggtggaaagaatgagaaaaaatctcagcagcatctctgctcctcc 250  Q
    |||||||||||||||||  ||||| |||||||||||||| ||| ||||||    
T  39552816 ttcttggtggaaagaatttgaaaagatctcagcagcatcactgttcctcc 39552865  T

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Target: chr7; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 39344355 - 39344106
Alignment:
Q  1 agtttaagcagaaatttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatctctcttttcttgcatcccaaggttctctatatcgatct 100  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |  || |||||| |||||| ||||| | ||| | ||    
T  39344355 agtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttcttacttgcaacccaagcttctcaacatcaacct 39344256  T
Q  101 cgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatc 200  Q
    || ||| | | |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39344255 cggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatc 39344156  T
Q  201 ttcttggtggaaagaatgagaaaaaatctcagcagcatctctgctcctcc 250  Q
    ||||||||| |||||||  |||||||||| ||||||||| ||| ||||||    
T  39344155 ttcttggtgaaaagaatttgaaaaaatctgagcagcatcactgttcctcc 39344106  T

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Target: chr7; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 39358931 - 39358682
Alignment:
Q  1 agtttaagcagaaatttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatctctcttttcttgcatcccaaggttctctatatcgatct 100  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||||||| |||||| ||||| | ||| | ||    
T  39358931 agtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaacccaagcttctcaacatcaacct 39358832  T
Q  101 cgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatc 200  Q
    || ||| | | |||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  39358831 cggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagcttctgaattgcagcccatttaagagattcttcatcatc 39358732  T
Q  201 ttcttggtggaaagaatgagaaaaaatctcagcagcatctctgctcctcc 250  Q
    ||||||||| |||||||  ||||| |||||||||||||| ||| ||||||    
T  39358731 ttcttggtgaaaagaatttgaaaagatctcagcagcatcactgttcctcc 39358682  T

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Target: chr7; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 39543393 - 39543642
Alignment:
Q  1 agtttaagcagaaatttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatctctcttttcttgcatcccaaggttctctatatcgatct 100  Q
    ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||||||| |||||| ||||| | ||||||||    
T  39543393 agtttgagcaaaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaacccaagcttctcaacatcgatct 39543492  T
Q  101 cgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatc 200  Q
    |  ||| | | ||||| ||  ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39543493 cagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaaagtaggaagtttctgaatggcagcccatttaagagcttcttcatcatc 39543592  T
Q  201 ttcttggtggaaagaatgagaaaaaatctcagcagcatctctgctcctcc 250  Q
    ||||||| | ||||||| ||||||||||||||||||||| ||| ||||||    
T  39543593 ttcttggcgaaaagaattagaaaaaatctcagcagcatcactgttcctcc 39543642  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 39585472 - 39585543
Alignment:
Q  129 caaacctttcctcaaacgtgcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatc 200  Q
    ||||||| ||||||| ||||||| ||| |||||  ||||||||||||||||||| | ||| |||||||||||    
T  39585472 caaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcctcttcatcatc 39585543  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 39579142 - 39579210
Alignment:
Q  129 caaacctttcctcaaacgtgcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatc 197  Q
    ||||||| ||||||| ||||||| ||| |||||  ||||||||||||||||||| | ||| ||||||||    
T  39579142 caaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcctcttcatc 39579210  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 39593906 - 39593958
Alignment:
Q  130 aaacctttcctcaaacgtgcaaaagtaggaagtttctgaattgcagcccattt 182  Q
    |||||| | |||||||||| || ||| |||||| |||||||||||||||||||    
T  39593906 aaacctcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattt 39593958  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 2882214 - 2882142
Alignment:
Q  133 cctttcctcaaacgtgcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttctt 205  Q
    ||||||||||||||   | ||||||| ||||| | || |||||||||||||||||||||||||||||| ||||    
T  2882214 cctttcctcaaacggttataagtagggagtttttcaagtgcagcccatttaagagcttcttcatcatcatctt 2882142  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 2871902 - 2871849
Alignment:
Q  152 aagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttctt 205  Q
    ||||||| ||||| | ||||||||||||||| || |||||||||||||||||||    
T  2871902 aagtagggagtttttcaattgcagcccatttgagggcttcttcatcatcttctt 2871849  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 4494246 - 4494209
Alignment:
Q  160 agtttctgaattgcagcccatttaagagcttcttcatc 197  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4494246 agtttctcaattgcagcccatttaagagcttcttcatc 4494209  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 44215153 - 44215206
Alignment:
Q  152 aagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttctt 205  Q
    ||||||| ||||| | || |||||||||||| ||||||||||||||||||||||    
T  44215153 aagtaggtagtttttcaagtgcagcccatttgagagcttcttcatcatcttctt 44215206  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 44238464 - 44238497
Alignment:
Q  172 gcagcccatttaagagcttcttcatcatcttctt 205  Q
    ||||||||||||||||||||||||||||||||||    
T  44238464 gcagcccatttaagagcttcttcatcatcttctt 44238497  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 44227330 - 44227364
Alignment:
Q  171 tgcagcccatttaagagcttcttcatcatcttctt 205  Q
    |||||||||||| ||||||||||||||||||||||    
T  44227330 tgcagcccatttgagagcttcttcatcatcttctt 44227364  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 2166851 - 2166900
Alignment:
Q  154 gtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttc 203  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||| |||||    
T  2166851 gtaggaagtctctcaatagcagcccatttaagagcttcttcatcgtcttc 2166900  T

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