View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_low_45 (Length: 241)
Name: NF3648_low_45
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_45 |
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| [»] scaffold1067 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 34373329 - 34373529
Alignment:
| Q |
33 |
tttgactatgcttattcaattacttgcaaaatgtggagcaatatctaacctgcagtatatttcatacatttatgtattaaatatctggtgcattgatttt |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34373329 |
tttgactatgcttattcaattacttgcaaaatgtggagcaatatctaacctgcagtatatttcatacatttatgtattaaatatctagtgcattgatttt |
34373428 |
T |
|
| Q |
133 |
tgactttgctttagtgttgttttcaaattagttgttgaaataaggttttattaaaagtatcttcctaaacacgcccgcccaatgctgaaattgtgatgat |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34373429 |
tgactttgctttagtgttgttttcaaattagttgttgaaataaggttttatgaaaagtatcttcctaaacacgcccgcccaatgctgaaattgtggtgat |
34373528 |
T |
|
| Q |
233 |
g |
233 |
Q |
| |
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| |
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|
| T |
34373529 |
g |
34373529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 34377862 - 34378000
Alignment:
| Q |
40 |
atgcttattcaattacttgcaaaatgtggagcaatatctaacctgcagtatatttcatacatttatgtattaaatatctggtgcattgatttttgacttt |
139 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||| |||||||||||||| ||||| | | |
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| T |
34377862 |
atgcttatttaattacttgcaaaatgtggagcaatatctaacctgtagcacattccatacatttatgtattaaacatctggtgcattgaattttgggtat |
34377961 |
T |
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| Q |
140 |
gctttagtgttgttttcaaattagttgttgaaataaggtt |
179 |
Q |
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| T |
34377962 |
gctgtagtatt-ttttcaaattagttattgaaataaggtt |
34378000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 15741585 - 15741779
Alignment:
| Q |
33 |
tttgactatgcttattcaattacttgcaaaatgtggagcaatatctaacctgcagtatatttcatacatttatgtattaaatatctggtgcattgatttt |
132 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||| ||||||||||||||||||||||| | ||||||| ||| |
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| T |
15741585 |
tttgactatgcttattcaattacttgcaaattgtggagcaatatctaacctgtaacacattccatacatttatgtattaaatatccgacgcattgaattt |
15741684 |
T |
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| Q |
133 |
tgactttgctttagtgttgttttcaaattagttgttgaaataaggttttattaaaagtatcttcctaaacacgcccgcccaatgctgaaattgtgatgat |
232 |
Q |
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| T |
15741685 |
tgactttgctttagtgtt-ttttgaaattagttattgaaataaggttt-atgaaaagtatcttcctaaacacaccc----aatgctgaaattctggtgat |
15741778 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 1574791 - 1574622
Alignment:
| Q |
33 |
tttgactatgcttattcaattacttgcaaaatgtggagcaatatctaacctgcagtatatttcatacatttatgtattaaatatctggtgcattgatttt |
132 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||| ||||||||||||||||||||||| | ||||||| ||| |
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| T |
1574791 |
tttgactatgcttattcaattacttgcaaattgtggagcaatatctaacctgtaacacattccatacatttatgtattaaatatccgacgcattgaattt |
1574692 |
T |
|
| Q |
133 |
tgactttgctttagtgttgttttcaaattagttgttgaaataaggttttattaaaagtatcttcctaaacac |
204 |
Q |
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|||||||||||||||||| |||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| |
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| T |
1574691 |
tgactttgctttagtgtt-ttttgaaattagttattgaaataagg-tttatgaaaagtatcttcctaaacac |
1574622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 10532791 - 10532622
Alignment:
| Q |
33 |
tttgactatgcttattcaattacttgcaaaatgtggagcaatatctaacctgcagtatatttcatacatttatgtattaaatatctggtgcattgatttt |
132 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||| || ||||||| ||| |
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| T |
10532791 |
tttgactatgcttattcagttacttgcaaattgtggagcaatatctaacctgtcgtacattcaatacatttatgtattaaatatccggcgcattgaattt |
10532692 |
T |
|
| Q |
133 |
tgactttgctttagtgttgttttcaaattagttgttgaaataaggttttattaaaagtatcttcctaaacac |
204 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||| | ||||| |||||||||||||||||||| |
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| T |
10532691 |
tgactttgctttagtgtt-ttttcaaattaattattgaaataa-gatttatgaaaagtatcttcctaaacac |
10532622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 10525968 - 10525842
Alignment:
| Q |
33 |
tttgactatgcttattcaattacttgcaaaatgtggagcaatatctaacctgcagtatatttcatacatttatgtattaaatatctggtgcattgatttt |
132 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||| ||| || |||||| |||||||||||||| ||||||||| ||| |
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| T |
10525968 |
tttgactatgcttattcagttacttgcaaaatttggagcaatatctaacctgtagtacattccacacatttttgtattaaatatctagtgcattgaattt |
10525869 |
T |
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| Q |
133 |
tgactttgctttagtgttgttttcaaat |
160 |
Q |
| |
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|||||||||||||||||| ||||||||| |
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| T |
10525868 |
tgactttgctttagtgtt-ttttcaaat |
10525842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1067 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold1067
Description:
Target: scaffold1067; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 2541 - 2378
Alignment:
| Q |
35 |
tgactatgcttattcaattacttgcaaaatgtggagcaatatctaacctgcagtatatttcatacatttatgtattaaatatctggtgcattgatttttg |
134 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||| |||||||||||||||| |||||| || ||||||| ||||| |
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| T |
2541 |
tgactatgcttattcaattacttgcaaattgtggagcaatatctaacctgtaatacattccatacatttatgtattgaatatccggcgcattgaattttg |
2442 |
T |
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| Q |
135 |
actttgctttagtgttgttttcaaattagttgttgaaataaggttttattaaaagtatcttcctaa |
200 |
Q |
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|||||||||||||||| |||| ||||||||| ||||||||||| ||||| |||||||| ||||||| |
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| T |
2441 |
actttgctttagtgtt-ttttgaaattagttattgaaataagg-tttatgaaaagtattttcctaa |
2378 |
T |
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