View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_low_47 (Length: 239)
Name: NF3648_low_47
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 44837354 - 44837125
Alignment:
| Q |
1 |
tatggctgaaaaatgtatgagcgaggaggatgagtgtagaatgataacagaaggaatactatctgcagggataagaaatattgttgcgtcagaaggtaga |
100 |
Q |
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| T |
44837354 |
tatggctgaaacatgtatgagcgaggaggatgagtgtagaatgataacagaaggaatactatctgtagggttaagaaatattgttgcgtcagaaggtaga |
44837255 |
T |
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| Q |
101 |
gaaaggactgttagaaatgtgaaaattgatgtttggagaagattctttgcaaggtatagaatggtggaaactaggtttagtgaggcatgtgtttaccaag |
200 |
Q |
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| T |
44837254 |
gaaaggactgttagaaatgtgaaaattgatgtttggagaagattctttgcaaggtatagaatggtggaaactaggtttagtgaggcatgtgtttaccaag |
44837155 |
T |
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| Q |
201 |
ctgaattggtgagtaaagagtttgatgatg |
230 |
Q |
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| T |
44837154 |
ctgaattggtgagtaaagagtttgatgatg |
44837125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 38926804 - 38926662
Alignment:
| Q |
30 |
atgagtgtagaatgataacagaaggaatactatctgcagggataagaaatattgttgcgtcagaaggtagagaaaggactgttagaaatgtgaaaattga |
129 |
Q |
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| T |
38926804 |
atgagtgtagagtaatgatggaagcaatattatctgaagggataagaaacattgttggtttggaagatgaagaaaggaaggttaggaatgtgaagattga |
38926705 |
T |
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| Q |
130 |
tgtttggagaagattctttgcaaggtatagaatggtggaaact |
172 |
Q |
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| T |
38926704 |
tgtttggagaaggttctttgcaaggtatagaatggtggaaact |
38926662 |
T |
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