View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_low_6 (Length: 505)
Name: NF3648_low_6
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 16135367 - 16135853
Alignment:
| Q |
17 |
aaaaggaagaccaacatttcctcatccaaccactcctacctcatttcaacccttcctcttatgagattaaccaacaaaacgattacaacaattcaaaatt |
116 |
Q |
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|||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16135367 |
aaaatgaagacaaacatttcctcttccaaccactcctacctcatttcaacccttcctcttatgagattaaccaacaaaacgattacaacaattcaaaatt |
16135466 |
T |
|
| Q |
117 |
cttcattccaaacaacaacaatatcatacatcgtatcctccttattatctttgtagcaataatctcaatatgggcaaactatgaagcatcaaaaaccttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16135467 |
cttcattccaaacaacaacaatatcatacatcgtatcctccttattctctttgtagcaataatctcaatatgggcaaactatgaagcatcaaaaaccttt |
16135566 |
T |
|
| Q |
217 |
gacatacatatagtaaacgacaccaaagactcccttgccggtcgtcgtttcactcttttctatgtctcaaatgacaaagcctcgcgtatacttctcaaca |
316 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16135567 |
gacatacatatagtaaacgacacaaaagactcccttgccggtcgtcgtttcactcttttctatgtctcaaacgacaaagcctcgcgtatacttctcaaca |
16135666 |
T |
|
| Q |
317 |
caagctccttcgtagaacaaattctataccc---tggaaacaacgataatattgatatcaagaataagaagattataaagagtgtcacccttcgtcttgc |
413 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16135667 |
caagctccttcgtagaacaaattctataccctaatggaaacaacgataatattgatatcaagaataagaagattataaagagtgtcacccttcgtcttgc |
16135766 |
T |
|
| Q |
414 |
tcgtcagaatctcgatacaaccattataatcaccgccgatggaaaagatattaatagctacgtgattgaaattagtcctatgctact |
500 |
Q |
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|||||||||||||||||| | || || ||||| || |||| |||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
16135767 |
tcgtcagaatctcgataccatcactacgatcacggcagatgaaaaaaatattaatagctacgtgattgaaattagtcctatgttact |
16135853 |
T |
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