View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_low_9 (Length: 432)
Name: NF3648_low_9
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 189 - 417
Target Start/End: Original strand, 17283537 - 17283765
Alignment:
| Q |
189 |
gtgtataagtgttggtactcttagatgatctatatactttagattagcactaggttgttagagttcagttacttgagttagtagttagttggataagatt |
288 |
Q |
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| T |
17283537 |
gtgtataagtgttggtactcttagatgatctatatactttagattagcactaggttgttagagttcagttacttgagttagtagttagttggataagatt |
17283636 |
T |
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| Q |
289 |
gagttagtcagtcagagattaacctagttacatagtttatttgaaagtaaagtaatcatagttagttaacataacctacttcatataaaggattattaga |
388 |
Q |
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| T |
17283637 |
gagttagtcagtcagagattaacatagttacatagtttacttgaaagtcaagtaatcataggtagttaacataacctacttcatataaaggattattaga |
17283736 |
T |
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| Q |
389 |
gtgtgtatttgatcatgaattttacaatt |
417 |
Q |
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| T |
17283737 |
gtgtgtatttgatcataaattttacaatt |
17283765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 17283269 - 17283449
Alignment:
| Q |
1 |
aacttgacagaatatctcaattctcaattcccatgtagatcattttaccatatgcaannnnnnnnccactacttatgtttctcgtgttaggg-tataact |
99 |
Q |
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| T |
17283269 |
aacttgacagaatatctcaattctcaattcccatgtagatcattttaccatatgcaattttttttctactacttatgtttctcgtgttgggggtataact |
17283368 |
T |
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| Q |
100 |
ataccttc--gagattgagaagagtacttgttaatttgtagtagcagcatgtataattcaaattataggtctagaagatta |
178 |
Q |
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| T |
17283369 |
ttaccttcatgagattgagaagagtacttgttaatttgtagtagcagcatgtataattcaaattataggtctagaagatta |
17283449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 34015838 - 34015902
Alignment:
| Q |
232 |
ttagcactaggttgttagagttcagttacttgagttagtagttagttggataagattgagttagt |
296 |
Q |
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| T |
34015838 |
ttagcacaagtttgctagagattagttacttgagctagaagttagttgaataagattgagttagt |
34015902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 35987858 - 35987790
Alignment:
| Q |
228 |
tagattagcactaggttgttagagttcagttacttgagttagtagttagttggataagattgagttagt |
296 |
Q |
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| T |
35987858 |
tagatcagcacaagtttgttagaggttagttatttgagctagaagttaattgaataagattgagttagt |
35987790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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