View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_high_4 (Length: 296)
Name: NF3649_high_4
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_high_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 28783248 - 28782974
Alignment:
| Q |
22 |
aaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccaccaccagtcccgatcaagaaaccatgtccac |
121 |
Q |
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| T |
28783248 |
aaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccaccaccagtcccgatcaagaaaccatgtccac |
28783149 |
T |
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| Q |
122 |
caaagattgagcacccagttctaccacctgttccaatatataagcctccagtagtaattccaaagccacccgttgttccaatatacaaaccaccagttgt |
221 |
Q |
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| T |
28783148 |
caaagattgagcacccagttctaccacctgttccaatatataagcctccagtagtaattccaaagccacccgttgttccaatatacaaaccaccagttat |
28783049 |
T |
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| Q |
222 |
tcttcctccattcaagaaaccaccatgtccacctcttccaacgctccctccattgcctccaaagagctttttcca |
296 |
Q |
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| T |
28783048 |
tcttcctccattcaagaaaccaccatgtccacctcttccaacgctccctccattgcctccaaagagctttttcca |
28782974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 28783353 - 28783201
Alignment:
| Q |
22 |
aaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccaccaccagtcccgatcaagaaaccatgtcc-- |
119 |
Q |
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| T |
28783353 |
aaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaagaaaccatgtccac |
28783254 |
T |
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| Q |
120 |
-accaaagattgagcacccagttctaccacctgttccaatatataagcctcca |
171 |
Q |
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| T |
28783253 |
caccaaaggttgaacatccagttttaccacctgttccagtatacaaacctcca |
28783201 |
T |
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