View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_high_5 (Length: 273)
Name: NF3649_high_5
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 270
Target Start/End: Original strand, 27642401 - 27642660
Alignment:
| Q |
11 |
atcatcacatcctctaggcgaattcttgaaaatcttcttatttcttgccttccgaaaaacccaaatgacagaatgccaaatcaaccaatagccccttccc |
110 |
Q |
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| T |
27642401 |
atcatcacatcctctaggcgaattcttgaaaatcttcttatttcttgccttccgaaaaacccaaatgacagaatgccaaatcaaccaatagccccttccc |
27642500 |
T |
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| Q |
111 |
cagtaaaactctccagctgaacacgtttaacagaatgccaagcttactaaacacatttaacaccttaaaaagccaaatcacaatgaagnnnnnnntggtt |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27642501 |
cagtaaaactcttcagctgaacacgtttaacagaatgtcaagcttactaaacacatttaacaccttaaaaagccaaatcacaatgaagaaaaaaatggtt |
27642600 |
T |
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| Q |
211 |
tgacgtttcctccctcccatcacagaacacacaacctgccaatgcatcttgcggaattgc |
270 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27642601 |
tgacgtttcctccctcccgtcacagaacacacaacctgccaatgcatcttgcggaattgc |
27642660 |
T |
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