View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_high_8 (Length: 222)
Name: NF3649_high_8
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 28782967 - 28782762
Alignment:
| Q |
1 |
caagttcggaaaattgcctccaaagagctttttccatcaccctaagtatggaaaatggcctccattgcctccaaagagcttcttccaccaccccaagtat |
100 |
Q |
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| T |
28782967 |
caagttcggaaaattgcctccaaagagctttttccatcaccctaagtatggaaaatggcctccattgcctccaaagagcttcttccaccaccccaagtat |
28782868 |
T |
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| Q |
101 |
tttggaaaatggccaccaatccctcataagagcttcttccatcacccaaagtttggaaagtggccaccaattaatccaaaaagcctcttccatcacccca |
200 |
Q |
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| T |
28782867 |
tttggaaaatggccaccaatccctcataagagcttcttccatcacccaaagtttggaaagtggccaccaattaatccaaaaagcctcttccatcacccca |
28782768 |
T |
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| Q |
201 |
agtttg |
206 |
Q |
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|||||| |
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| T |
28782767 |
agtttg |
28782762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 28782997 - 28782813
Alignment:
| Q |
13 |
attgcctccaaagagctttttccatcaccctaagtatggaaaatggcctccattgcctccaaagagcttcttccaccaccccaagtattttggaaaatgg |
112 |
Q |
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| T |
28782997 |
attgcctccaaagagctttttccatcaccccaagttcggaaa---------attgcctccaaagagctttttccatcaccctaagta---tggaaaatgg |
28782910 |
T |
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| Q |
113 |
ccaccaatccctcataagagcttcttccatcacccaaag---tttggaaagtggccaccaattaatccaaaaagcctcttccatcaccccaagtttg |
206 |
Q |
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| T |
28782909 |
cctccattgcctccaaagagcttcttccaccaccccaagtattttggaaaatggccaccaatccctcataagagcttcttccatcacccaaagtttg |
28782813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 28782904 - 28782760
Alignment:
| Q |
13 |
attgcctccaaagagctttttccatcaccctaagtat---ggaaaatggcctccattgcctccaaagagcttcttccaccaccccaagtattttggaaaa |
109 |
Q |
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|||||||||||||||||| ||||| ||||| |||||| ||||||||||| ||| | |||| |||||||||||||| ||||| |||| ||||||| |
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| T |
28782904 |
attgcctccaaagagcttcttccaccaccccaagtattttggaaaatggccaccaatccctcataagagcttcttccatcacccaaagt---ttggaaag |
28782808 |
T |
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| Q |
110 |
tggccaccaatccctcataagagcttcttccatcacccaaagtttgga |
157 |
Q |
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| T |
28782807 |
tggccaccaattaatccaaaaagcctcttccatcaccccaagtttgga |
28782760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 28783002 - 28782963
Alignment:
| Q |
59 |
cctccattgcctccaaagagcttcttccaccaccccaagt |
98 |
Q |
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| T |
28783002 |
cctccattgcctccaaagagctttttccatcaccccaagt |
28782963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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