View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_low_1 (Length: 806)
Name: NF3649_low_1
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 8238818 - 8239344
Alignment:
| Q |
1 |
ttgacaccataaaaccaagcagaaccctacccaaccgagcaagagaaatacaatgcaaggtcacccaaagacataactccccatacaatcacccccacaa |
100 |
Q |
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| T |
8238818 |
ttgacaccataaaaccaagaagaaccctacccaaccgagcaagggaaatacaatgcaaggtcatccaaagacataactccccatacaatcacccccgcaa |
8238917 |
T |
|
| Q |
101 |
gtctctaccgttgctagaagagaacatgttttatttcccttccatagtaggagtaggaatgactaaaatgttgacctaaaaaccatttccacaaggtgaa |
200 |
Q |
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| T |
8238918 |
gtctctatcgttgccagaagagaacatgttttatttcccttccatagtaggagcatgaatgactaaaatgttgacctaaaaaccatttccacaaggtgaa |
8239017 |
T |
|
| Q |
201 |
tttaatcatatccaccggttgatgcttagagatcaccatttccaggaagataaaatcactttgaggcctccagatagagcacacaaaagaatgtaagacc |
300 |
Q |
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| T |
8239018 |
tttaatcatatccaccgattgatgcttagagatcatcattcccaggaagataaaatcgctttgaggcctcccgatagaccacacaaaagaatgtaagacc |
8239117 |
T |
|
| Q |
301 |
agtatgagacctattccaacctttcttccatctcaagccccaaaacaaaactaagggtacttcccaactccaaaggtagcggaaactcctagcctaacca |
400 |
Q |
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| T |
8239118 |
agtatgagacctattccaacctttcttccatctcaagccccaaaacaaaactaagggtacttcccaactccaaaggtagcggaaactcctagcctaacca |
8239217 |
T |
|
| Q |
401 |
cctgaaaactatataccacaccggactaaagaacaagcacataacaaacaaatgactagtcgactcaatcaacgttccacaaaaactacaagagatacta |
500 |
Q |
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| T |
8239218 |
cctgaaaactatataccacaccggactaaagaacaagcacataacaaacaaatgactagtcgactcaatcaacgtcccacaaaaactacaagagataccc |
8239317 |
T |
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| Q |
501 |
ccaggataaccctcacaacaaaaagat |
527 |
Q |
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| T |
8239318 |
ccatgataaccctcacaacaaaaagat |
8239344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 524 - 800
Target Start/End: Original strand, 8239671 - 8239942
Alignment:
| Q |
524 |
agatggacacctgatacaacctagggaacaaagaacgcaaccttaccacctggtcattcaaaaaggatgtggagcacccattcacctaatctagatttat |
623 |
Q |
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| T |
8239671 |
agatggacacctgatacaacctagggaacaaagaacgcaaccttaccacctggtcattcaaaaaggatgtggagcacccattcacctaatctagatttat |
8239770 |
T |
|
| Q |
624 |
agtgcttaatcaaaatcttaggcaaaatttcaacaagctaagtaaaagagaaggaagtttgctggaaaataaagctagacaaaatgttcgaagatgagaa |
723 |
Q |
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| T |
8239771 |
aatgcttaatcaaaatgttaggcaaaatttcaacaag-----tgaaagagaaggaagtttgctggaaaataaagctagacaaaatgtttgaagatgagaa |
8239865 |
T |
|
| Q |
724 |
tagccgaagtattttgggatgtaaaaatggatatgcgtgcttaataggtctcattgacaagaagccgtgagaattat |
800 |
Q |
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| T |
8239866 |
tagccgatgtattttgggatgtaaaaatggatatgcgtgcttaataggtctcattgacaagaaatcgtgagaattat |
8239942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 648
Target Start/End: Complemental strand, 34704733 - 34704688
Alignment:
| Q |
602 |
cattcacctaatctagatttatagtgcttaatcaaaatcttaggcaa |
648 |
Q |
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| T |
34704733 |
cattcacctaatctagttttatagtgcttaa-caaaatcttaggcaa |
34704688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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