View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_low_10 (Length: 294)
Name: NF3649_low_10
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 17188188 - 17188458
Alignment:
| Q |
20 |
taaaccaataaaataacgagtatttctagcattgctctaaaccatatagaacttgctcaaagtaaataaagagtataagggaagagataatcgcgcaata |
119 |
Q |
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| T |
17188188 |
taaaccaataaaataatgagtattgctagcattgctctaaaccatatagaacttgctcaaagtaaataaagagtataagggaagagataatcgcgcaata |
17188287 |
T |
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| Q |
120 |
tgtttctacttgttcattgtccagctgatagctagttcactccactcctaacagagtgatttgccttctcaacgagaaggattttattcactactaagta |
219 |
Q |
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| T |
17188288 |
tgtttctacttgttcattgtccagctgatagctagttcactccactcctaacagagtgatttgccttctcaacgagaaggattttattcactaataagta |
17188387 |
T |
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| Q |
220 |
ttattgactttgcctctccaagtattatgaatatttgatacattgtctctccatgctgagtattatctacc |
290 |
Q |
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| T |
17188388 |
tttttgactcggcctctccaaacattgtaagtattattgactttgtctctccatactgagtattatttacc |
17188458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 17179893 - 17180000
Alignment:
| Q |
114 |
gcaatatgtttctacttgttcattgtccagctgatagctagttcactccactcctaacagagtgatttgccttctcaacgagaaggattttattcactac |
213 |
Q |
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||||||||||||| |||||||||| |||| |||||||||||||||||||| |||| ||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
17179893 |
gcaatatgtttctgcttgttcattatccatttgatagctagttcactccacacctaccagagcgatttgccttctacacgagaaggatttaattcactaa |
17179992 |
T |
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| Q |
214 |
taagtatt |
221 |
Q |
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|||||||| |
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| T |
17179993 |
taagtatt |
17180000 |
T |
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