View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3649_low_12 (Length: 250)

Name: NF3649_low_12
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3649_low_12
NF3649_low_12
[»] chr2 (3 HSPs)
chr2 (123-233)||(8238611-8238722)
chr2 (2-54)||(8238815-8238867)
chr2 (179-220)||(45411765-45411806)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 8238722 - 8238611
Alignment:
Q  123 atccgtcgtgagtacaacttgtgcatctttt-atttggactagaaaaattgcttaccactatttgaagccactatgaaatcaaggataattttgtaaata 221  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8238722 atccatcgtgagtacaacttgtgcatctttttatttggactagaaaaattgcttaccactatttgaagccactatgaaatcaaggataattttgtaaata 8238623  T
Q  222 ttaatcaaagtt 233  Q
    ||||||||||||    
T  8238622 ttaatcaaagtt 8238611  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 8238867 - 8238815
Alignment:
Q  2 tatttcccttgctcggttgggtagggttcttcttggttttatggtgtcaagag 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8238867 tatttcccttgctcggttgggtagggttcttcttggttttatggtgtcaagag 8238815  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 45411765 - 45411806
Alignment:
Q  179 actatttgaagccactatgaaatcaaggataattttgtaaat 220  Q
    ||||||||||| ||||||||||||||| |||||||| |||||    
T  45411765 actatttgaagtcactatgaaatcaagaataattttttaaat 45411806  T

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