View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_low_13 (Length: 249)
Name: NF3649_low_13
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10560569 - 10560811
Alignment:
| Q |
1 |
ttctctttgtgtgcttcactatacttatgacaatatattaatttgatttattttttgtagcaatgcattaagatgaacttatattattatattgcctcga |
100 |
Q |
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| T |
10560569 |
ttctctttgtgtgcttcactatacttatgacaatatattaatttgatttattttttgtagcaatacattaagatgaacttatattattatattgcctcga |
10560668 |
T |
|
| Q |
101 |
aatatgagtgcttgtagtt-----caaattttgtaaggtgttgatcaagagcacttgcaaaaacttgcccaatgtcgaagtgtcatgtttaaaagaaaac |
195 |
Q |
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| T |
10560669 |
aatatgagtgcttgtaattatatacacattt--taaggtgttgatcaagagcacttgcaaaaacttgcccaatgtcgaagtgtcatgtttaaaagaaaac |
10560766 |
T |
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| Q |
196 |
aattgcttcatttttctttcacctattttaggctatatccctttg |
240 |
Q |
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| T |
10560767 |
aattgcttcatttttctttcacctattttaggctatatccctttg |
10560811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 26159202 - 26159132
Alignment:
| Q |
129 |
taaggtgttgatcaagagcacttgcaaaaacttgcccaatgtcgaagtgtcatgtttaaaagaaaacaattg |
200 |
Q |
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| T |
26159202 |
taaggggttgatcaagagcacttgcaaacacttgcccagtgtccaagtgt-atgtttaaaagaaaacaattg |
26159132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 55780998 - 55780962
Alignment:
| Q |
180 |
atgtttaaaagaaaacaattgcttcatttttctttca |
216 |
Q |
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| T |
55780998 |
atgtttaaaagaaaacaattgcttcatttttctttca |
55780962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 55845178 - 55845142
Alignment:
| Q |
180 |
atgtttaaaagaaaacaattgcttcatttttctttca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
55845178 |
atgtttaaaagaaaacaattgcttcatttttctttca |
55845142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 19852345 - 19852309
Alignment:
| Q |
180 |
atgtttaaaagaaaacaattgcttcatttttctttca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
19852345 |
atgtttaaaagaaaacaattgcttcatttttctttca |
19852309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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