View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_low_2 (Length: 594)
Name: NF3649_low_2
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 25655904 - 25656043
Alignment:
| Q |
4 |
cggatgtcgaagaatatattgtggataggattaaaacaacctcttgcatgtgggttttagcggnnnnnnnggggggccttgtttgtcatacaagtggttc |
103 |
Q |
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| T |
25655904 |
cggatgtcgaagattatattgtggataggattaaaacaacctcttgcatgtgggttttagcggaaaaaaaggggggccttgtttgtaatacaagtggttc |
25656003 |
T |
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| Q |
104 |
tcgaaccctcatttttgtttaacatcctaagtttaatagt |
143 |
Q |
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| T |
25656004 |
tcgaaccctcttttttgtttaatatcctaagtttaatagt |
25656043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 390 - 491
Target Start/End: Original strand, 25656067 - 25656168
Alignment:
| Q |
390 |
gttaaggtgatcagtcttaatttttctgggtcaagtagtttgattgttataattcactttataagatgatcactcttgatttttactcggtcaacatatg |
489 |
Q |
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| T |
25656067 |
gttaaggtgatcagtcttgatttttctgggtcaagtagtttgattgctagaattcactttataagatgatcactcttgatttttacccggtcaacatgtg |
25656166 |
T |
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| Q |
490 |
ga |
491 |
Q |
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|| |
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| T |
25656167 |
ga |
25656168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 7441646 - 7441694
Alignment:
| Q |
165 |
accccttatattgttcccgagttgtgggttaagtactttttgtacttct |
213 |
Q |
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| T |
7441646 |
accccttatacttttcctgagttgcgggttaagtactctttgtacttct |
7441694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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