View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_low_3 (Length: 386)
Name: NF3649_low_3
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 36163689 - 36164036
Alignment:
| Q |
15 |
aacatgttcgtgttggaagctgattttggctcttcgccatctttttccaaataattgttatttttgttatcttagtagttagtgtgttttattcagatac |
114 |
Q |
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| T |
36163689 |
aacatgttcgtgttggaagctgattttggctcttcgccatctttttccaaataattgttatttttgttatcttagtagttagtgtgttttattcagatac |
36163788 |
T |
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| Q |
115 |
gctctgaagttgactcttaaatgtggagtactagagtggttttggctttgaactcgttatgttgtcttgatcgtctcagatattagaacttcagagggtt |
214 |
Q |
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| T |
36163789 |
gctctgaagttgactcttaaatgtggagtactagagtggttttggctttgaactcgttatgttgtcttgatcgtctcagatattagaacttcagagggtt |
36163888 |
T |
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| Q |
215 |
tggctactttgtggacctcaacatgatactgaacttgtatttttgtggaagctcattagtcgtggtgttcagttgtagaagtgtgttttttccttttccc |
314 |
Q |
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| T |
36163889 |
tggctactttgtggacctcaacatgatactgaacttgtatttttgtggaagctcattagtcgtggtgttcagttgtagaagtgtgttttttccttttccc |
36163988 |
T |
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| Q |
315 |
actgtcaatgggatgagcagtgcgggttgtgcaatagtaggtattgga |
362 |
Q |
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| T |
36163989 |
actgtcaatgggatgagcacaacgggttgtgcaatagtaggtattgga |
36164036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 362
Target Start/End: Original strand, 30079514 - 30079643
Alignment:
| Q |
233 |
caacatgatactgaacttgtatttttgtggaagctcattagtcgtggtgttcagttgtagaagtgtgt-tttttccttttcccactgtcaatgggatgag |
331 |
Q |
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| T |
30079514 |
caacatgatattgaacttgtatttttttggaagctctttagacgcagtgtccagttgca-tagtgagtgtttttctttttttggctgtcaaggggaagag |
30079612 |
T |
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| Q |
332 |
cagtgcgggttgtgcaatagtaggtattgga |
362 |
Q |
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|||||| |||| |||| | |||||||||||| |
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| T |
30079613 |
cagtgctggttttgcattggtaggtattgga |
30079643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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