View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_low_4 (Length: 360)
Name: NF3649_low_4
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 2 - 343
Target Start/End: Original strand, 19474632 - 19474973
Alignment:
| Q |
2 |
catcactaaatcccaacaaactcacttccttaaaatctttatgcaaaacaacaccataccctaaactttgtttcaactcattaaaactttccatatccat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474632 |
catcactaaatcccaacaaactcacttccttaaaatctttatgcaaaacaacaccataccctaaactttgtttcaactcattaaaactttccatatccat |
19474731 |
T |
|
| Q |
102 |
aaacataaacccaaacatcataacctaccttcttcattcacttcaactagcaatatccgaaaccacaaagctctcgaatcttttccacgacgttggaaca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474732 |
aaacataaacccaaacatcataacctaccttcttcattcacttcaactagcaatatccgaaaccacaaagctctcgaatcttttccacgacgttggaaca |
19474831 |
T |
|
| Q |
202 |
tcgaatatcgtagagaaacaacgaggatcaattcaagactgcaaggaacttcatcaatcaaccttaacttcattgaaaagatcattatccggaatccgtt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474832 |
tcgaatatcgtagagaaacaacgaggatcaattcaagactgcaaggaacttcatcaatcaaccttaacttcattgaaaagatcattatccggaatccgtt |
19474931 |
T |
|
| Q |
302 |
cctcgaacaaaagaaacatagctgatgctagaatctacctca |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474932 |
cctcgaacaaaagaaacatagctgatgctagaatctacctca |
19474973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 51546810 - 51546918
Alignment:
| Q |
73 |
ttcaactcattaaaactttccatatccataaacataaacccaaacatcataacctaccttcttcattcacttcaactagcaatatccgaaaccacaaagc |
172 |
Q |
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||||| |||| |||||| ||||| || ||| ||||||| ||||||||||| | | |||||||||||| || ||| || ||||||| ||||||||||||| |
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| T |
51546810 |
ttcaattcatcaaaactctccatctcaatagacataaatccaaacatcattaacatccttcttcattccctccaagtatcaatatctgaaaccacaaagc |
51546909 |
T |
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| Q |
173 |
tctcgaatc |
181 |
Q |
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|||| |||| |
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| T |
51546910 |
tctctaatc |
51546918 |
T |
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