View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_low_5 (Length: 359)
Name: NF3649_low_5
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 43 - 351
Target Start/End: Original strand, 29862404 - 29862712
Alignment:
| Q |
43 |
agatcatatctcttactctgtcaaacctatctagaatgtgggtgtggcatgaacgacgtagtgggaggttatatatatgatattgagaggccttgcttgc |
142 |
Q |
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| T |
29862404 |
agatcatatctcttactctgtcaaacctatctagaatgtgggtgtggcatgaacgacgtagtgggaggttatatatatgatattgagaggccttgcttgc |
29862503 |
T |
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| Q |
143 |
taggggattaagttaattagcaatacaacttatataaatagatcatctactaagcaagaagacctaaatcattcattagctctatacatattcgggcctt |
242 |
Q |
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| T |
29862504 |
taggggattaagttaattagcaatacaacttatataaatagatcatctactaagcaagaagacctaaatcattcattagctctatacatattcgggcctt |
29862603 |
T |
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| Q |
243 |
agtcacgacacattattgtccaagtcaatccataattatacttcaataacatttttatttattattaatatggatacaatgtagaatatattaaattaag |
342 |
Q |
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| T |
29862604 |
agtcccgacacattattgtccaagtcaatccataattatacttcaataacatttttatttattattaatatggatacaatgtagaatatattaaattaag |
29862703 |
T |
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| Q |
343 |
agtattatc |
351 |
Q |
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||||||||| |
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| T |
29862704 |
agtattatc |
29862712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 29861763 - 29861797
Alignment:
| Q |
18 |
aataccatcaagaaagaccacaataagatcatatc |
52 |
Q |
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| T |
29861763 |
aataccatcaagaaagaccacaataagatcatatc |
29861797 |
T |
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