View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3649_low_6 (Length: 326)
Name: NF3649_low_6
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3649_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 45966078 - 45966387
Alignment:
| Q |
9 |
gaagaaaatatcagcaccagcacctcttacttgaatccaatttgatggatagttaaatgaataaccatcaaatgtatcaacatattcacgaaacacacga |
108 |
Q |
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| T |
45966078 |
gaagaaaatatcagcaccagcacctcgtacttgaatccaatttgatggatagttaaatgaataaccatcaaatgtatcaacatattcacgaaacacacga |
45966177 |
T |
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| Q |
109 |
ggttgttgtgctaatgctgtaccaatgtcggagagaatgtatgt---tgataagattaatgatattgcttttcttctaggaactgcaaaagctgctttta |
205 |
Q |
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| T |
45966178 |
ggttgttgtgctaatgctgtaccaatgtcggagagaatgtatgttgatgataagattaatgatattgcttttcttctaggaactgcaaaagctgctttta |
45966277 |
T |
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| Q |
206 |
gctagcagagacaaaaatcaaagatatagt-----aaataaaataaaataattgtgagaaaggagaaagcttatgaaatggaatttaccgaattgggtgt |
300 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45966278 |
gctagcagagagaaaaatcaaagatatagtaaataaaataaaataaaataattgtgagaaaggagaaagcttatgaaatggaatttaccgaattgggtgt |
45966377 |
T |
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| Q |
301 |
ggaagaaatg |
310 |
Q |
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|||||||||| |
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| T |
45966378 |
ggaagaaatg |
45966387 |
T |
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