View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3649_low_8 (Length: 306)

Name: NF3649_low_8
Description: NF3649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3649_low_8
NF3649_low_8
[»] chr8 (3 HSPs)
chr8 (18-258)||(42202576-42202816)
chr8 (50-242)||(44684390-44684582)
chr8 (148-185)||(3578048-3578085)
[»] chr5 (4 HSPs)
chr5 (18-229)||(3678241-3678451)
chr5 (28-235)||(2756301-2756508)
chr5 (52-237)||(42628996-42629181)
chr5 (145-242)||(3761007-3761104)
[»] chr4 (4 HSPs)
chr4 (22-229)||(55329041-55329248)
chr4 (18-237)||(18847941-18848160)
chr4 (18-242)||(42111001-42111225)
chr4 (18-236)||(55353448-55353666)
[»] chr2 (2 HSPs)
chr2 (50-206)||(38970967-38971123)
chr2 (145-226)||(16080465-16080546)
[»] chr6 (1 HSPs)
chr6 (28-237)||(380662-380872)
[»] chr7 (4 HSPs)
chr7 (28-237)||(6232104-6232314)
chr7 (88-237)||(48888137-48888286)
chr7 (116-236)||(19883466-19883586)
chr7 (109-237)||(44346457-44346585)
[»] chr3 (1 HSPs)
chr3 (50-237)||(51361191-51361378)
[»] scaffold0691 (1 HSPs)
scaffold0691 (50-242)||(1097-1289)
[»] chr1 (1 HSPs)
chr1 (145-242)||(13155021-13155117)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 42202576 - 42202816
Alignment:
Q  18 gcatgcggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatt 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42202576 gcatgcggttttatggtcgatttggaaagcccggaatgataggattttcaataatttaatgaaggattatggtgaaatagttgaggaaattaaggtgatt 42202675  T
Q  118 tcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagt 217  Q
    | ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42202676 ttgtggaattgggtgaattctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggcagt 42202775  T
Q  218 tttagaggtgtctgggacttatggttctagagctcgcaggt 258  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42202776 tttagaggtgtctgggacttatggttctagagctcgcaggt 42202816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 44684390 - 44684582
Alignment:
Q  50 ggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagag 149  Q
    ||||||||||||||||||||  | |  |||  ||| |||| ||||| ||||| || ||||||||| | || ||||||||||||| | | | |||||||||    
T  44684390 ggaatgataggatttttaattctattgtgaaagatcatggggaaattgttgatgacattaaggtgctctcttggaattgggcgattacaaaacttaagag 44684489  T
Q  150 tcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggacttatggt 242  Q
    |||||| ||||||| ||| ||||||||||||||||| |  ||||||||  |  || || ||||| ||||||||||||||||||||||| ||||    
T  44684490 tcctccctgcctcttttatgagtggtgttggaaccccaaggaatgcttgctccgacaggtggggtagttttagaggtgtctgggacttttggt 44684582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 3578085 - 3578048
Alignment:
Q  148 agtcctccttgcctctattacgagtggtgttggaaccc 185  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  3578085 agtcctctttgcctcttttacgagtggtgttggaaccc 3578048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 3678451 - 3678241
Alignment:
Q  18 gcatgcggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatt 117  Q
    |||||||||  ||||| ||||||||||||| ||||||||||||||||| || ||||||  || ||||| ||||||||| |||||||| ||||||||||||    
T  3678451 gcatgcggtggtatggacgatttggaaggcgcggaatgataggattttcaaaaatttatcgaaggattttggtgaaattgttgaggagattaaggtgatt 3678352  T
Q  118 tcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagt 217  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||| | ||| |||    
T  3678351 tcgtggaattgggtgattactagacttaagagtcctccttgcctctattacaagttgtgttggaaccccatcgaatgcttattaagataggt-gggcagt 3678253  T
Q  218 tttagaggtgtc 229  Q
    ||||||||||||    
T  3678252 tttagaggtgtc 3678241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 2756508 - 2756301
Alignment:
Q  28 ttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaatt 127  Q
    |||||| |||||||||| ||  | ||||||||||||||||||||| |  |||  |||||||||||||| ||||| || ||||||||| ||||||||||||    
T  2756508 ttatggacgatttggaaagcgagaaatgataggatttttaataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgtggaatt 2756409  T
Q  128 gggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtg 227  Q
    ||  |  | ||||||| ||||| ||||| ||||| ||||||||||||||||||||||| |   |||| ||| |||||||| ||||| ||||||||||| |    
T  2756408 ggatggtttctagactaaagaggcctccgtgcctttattacgagtggtgttggaaccccaagaaatgtttactgagatagttggggtagttttagaggcg 2756309  T
Q  228 tctgggac 235  Q
    || |||||    
T  2756308 tccgggac 2756301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 42629181 - 42628996
Alignment:
Q  52 aatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagagtc 151  Q
    |||||||||||||||| |||| |  |||  || | ||||||||| ||||| ||||||| |||| |||||||||||||||||  | ||||||| || ||||    
T  42629181 aatgataggatttttagtaatcttgtgaaagaatttggtgaaattgttgatgaaattatggtgctttcgtggaattgggcggttactagactgaaaagtc 42629082  T
Q  152 ctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactt 237  Q
    |||| ||||||||||| ||||||||| ||||||| |  |||||  |  |||||||| ||||| ||||||||||| ||| |||||||    
T  42629081 ctccctgcctctattatgagtggtgtcggaaccccaaggaatgtcttctgagatagttggggtagttttagaggcgtccgggactt 42628996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 3761104 - 3761007
Alignment:
Q  145 aagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggacttatggt 242  Q
    |||||| |||| ||||||||||||||||| |||| |||||| |  ||||| ||| ||| |||| ||||| |||||||||||||| |||||||| ||||    
T  3761104 aagagttctccctgcctctattacgagtgctgtttgaaccccaaggaatgtttactgatatagctggggtagttttagaggtgtttgggacttttggt 3761007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 55329041 - 55329248
Alignment:
Q  22 gcggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgt 121  Q
    ||||| |||||| |||||||||| ||  |||||||||||||||| |||||  |  ||| ||||| ||||||||| || ||||||||||||||||||||||    
T  55329041 gcggtgttatggacgatttggaaagcgaggaatgataggattttcaataaccttttgaaggattttggtgaaattgtggaggaaattaaggtgatttcgt 55329140  T
Q  122 ggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagtttta 221  Q
    | |||||  ||||| | |||||||||||| |||||||||||||||||||||||||||||||||  |  |||||||||||||||||| ||||| |||||||    
T  55329141 gaaattgaacgaattcaagacttaagagttctccttgcctctattacgagtggtgttggaacctcaaggaatgcttattgagataggtggggcagtttta 55329240  T
Q  222 gaggtgtc 229  Q
    ||||||||    
T  55329241 gaggtgtc 55329248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 18847941 - 18848160
Alignment:
Q  18 gcatgcggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatt 117  Q
    ||||||||| |||||| |||||||||| ||  | ||||||||||||||||||||| |  |||  |||  || |||||| ||||| || ||||||||| ||    
T  18847941 gcatgcggtattatggacgatttggaaagcaagaaatgataggatttttaataatcttgtgaaagatcgtgatgaaattgttgatgacattaaggtgctt 18848040  T
Q  118 tcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagt 217  Q
    | |||||||||||||  | |||||||||| |||||||| ||||||||||||||||||||||||||||| |  |||||| ||||||||||| ||||| |||    
T  18848041 tggtggaattgggcggttactagacttaaaagtcctccctgcctctattacgagtggtgttggaaccccaaggaatgcctattgagatagttggggtagt 18848140  T
Q  218 tttagaggtgtctgggactt 237  Q
    |||||||||||| |||||||    
T  18848141 tttagaggtgtccgggactt 18848160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 42111225 - 42111001
Alignment:
Q  18 gcatgcggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatt 117  Q
    |||||||||| | ||| ||||||||||  |  ||||||||||||||||||||  | |  |||  |||||||| ||||| ||||| || ||||||||| |     
T  42111225 gcatgcggttctttggacgatttggaaaacgaggaatgataggatttttaattctattgtgaaagattatggggaaattgttgatgacattaaggtgctc 42111126  T
Q  118 tcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagt 217  Q
    || ||||||||||||| | | ||||||||||||||||  ||||||| ||  ||||||||||||||||| |  ||||||||  |  || || ||||| |||    
T  42111125 tcttggaattgggcgattacaagacttaagagtcctcactgcctcttttttgagtggtgttggaaccccaaggaatgcttgctccgacaggtggggtagt 42111026  T
Q  218 tttagaggtgtctgggacttatggt 242  Q
    |||||||||||| ||||||| ||||    
T  42111025 tttagaggtgtccgggacttttggt 42111001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 55353448 - 55353666
Alignment:
Q  18 gcatgcggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatt 117  Q
    |||||||||  | |||||||||||||| ||  |||||||||||||||| |||  | |  | | ||||  || ||| || ||||| || || ||||||||     
T  55353448 gcatgcggtgatgtggtcgatttggaaagcgaggaatgataggattttcaattctcttgtcaaggatgttgctgatatcgttgatgacatcaaggtgatc 55353547  T
Q  118 tcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagt 217  Q
    |||||||||||||||||| | |||||||| |||||||||||||||| |||||| ||||| |||||||| |   ||||| | ||| ||||| ||||| |||    
T  55353548 tcgtggaattgggcgaattccagacttaaaagtcctccttgcctcttttacgattggtgctggaaccccaagaaatgccttttgcgataggtggggtagt 55353647  T
Q  218 tttagaggtgtctgggact 236  Q
    || ||||||| | ||||||    
T  55353648 ttcagaggtggcagggact 55353666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 38970967 - 38971123
Alignment:
Q  50 ggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagag 149  Q
    |||||||||||||||| || |||  ||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||| ||    
T  38970967 ggaatgataggattttcaaaaatcaaatgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtggaattgggcaaattctagacttaaaag 38971066  T
Q  150 tcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagata 206  Q
    ||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  38971067 tcctcattgcctctattacgagtggtgttggaaccccaaagaatgcttattgagata 38971123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 16080465 - 16080546
Alignment:
Q  145 aagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggt 226  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |  ||||| ||  ||||| |  ||||| ||||||||||||    
T  16080465 aagagtcctccttgcctcttttatgagtggtgttggaaccccaaggaatgtttgatgagaaaattggggtagttttagaggt 16080546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 380872 - 380662
Alignment:
Q  28 ttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaatt 127  Q
    ||||||||||||||||| |   | ||||||||||| ||||| |||||    | ||||| ||||||| | || ||||| ||||||||||||||||||||||    
T  380872 ttatggtcgatttggaaagtgagaaatgataggatctttaacaatttttccaaggattttggtgaattggtggaggatattaaggtgatttcgtggaatt 380773  T
Q  128 gggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagat-agatggggaagttttagaggt 226  Q
    |||| ||| ||||||||| ||||||||| |||||||||||||||||||| |||||||| |  |||||||||||||||| |  ||||| ||||||||||||    
T  380772 gggctaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagataacgtggggcagttttagaggt 380673  T
Q  227 gtctgggactt 237  Q
    ||| |||||||    
T  380672 gtccgggactt 380662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 6232104 - 6232314
Alignment:
Q  28 ttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaatt 127  Q
    ||||||||||||||||| ||  | ||||||| ||| ||||| ||| |    | ||||| ||||||| | || ||||| ||||||||||||||||||||||    
T  6232104 ttatggtcgatttggaaagcgagaaatgatatgatctttaacaatatttccaaggattttggtgaattggtggaggatattaaggtgatttcgtggaatt 6232203  T
Q  128 gggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagat-agatggggaagttttagaggt 226  Q
    |||| ||| ||||||||| ||||||||| |||||||||||||||||||| |||||||| |  |||||||||||||||| |  ||||| ||||||||||||    
T  6232204 gggctaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagataatgtggggcagttttagaggt 6232303  T
Q  227 gtctgggactt 237  Q
    ||| |||||||    
T  6232304 gtccgggactt 6232314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 48888137 - 48888286
Alignment:
Q  88 ggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaacccta 187  Q
    |||||||| ||||| || ||||||||| | ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  48888137 ggtgaaatggttgatgatattaaggtgctctcgtggaattgggtgaattctagactaaagagtcctccttgcctctattacgagtggtgttggaacccca 48888236  T
Q  188 tcgaatgcttattgagatagatggggaagttttagaggtgtctgggactt 237  Q
      |||||  | ||||||| | ||||| |||| |||||||||| |||||||    
T  48888237 aggaatgtcttttgagattggtggggtagttctagaggtgtccgggactt 48888286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 19883586 - 19883466
Alignment:
Q  116 tttcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaa 215  Q
    |||||||||||||||||    ||||||| ||||||||||| ||||||||||||||||||||||||||||| |  ||||| |||||||||||| ||||| |    
T  19883586 tttcgtggaattgggcggtgtctagactaaagagtcctccgtgcctctattacgagtggtgttggaaccccaaggaatgtttattgagatagttggggta 19883487  T
Q  216 gttttagaggtgtctgggact 236  Q
    |||||||||||||| ||||||    
T  19883486 gttttagaggtgtccgggact 19883466  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 44346457 - 44346585
Alignment:
Q  109 aaggtgatttcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagataga 208  Q
    |||||| ||||||| |||||||||||| |||||||||| |||||||||||||||| |||| ||||||| |||||||| |  |||||| | ||| | |||     
T  44346457 aaggtgctttcgtgtaattgggcgaattctagacttaaaagtcctccttgcctcttttacaagtggtgctggaaccccaaagaatgccttttgcgttagg 44346556  T
Q  209 tggggaagttttagaggtgtctgggactt 237  Q
    ||||||||||| ||||||||  |||||||    
T  44346557 tggggaagtttcagaggtgttagggactt 44346585  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 51361191 - 51361378
Alignment:
Q  50 ggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagag 149  Q
    ||||||||||||||||||||||  |  | |  ||| | |||||||| ||| | || ||||||||| ||| |||||||||| ||  | ||||||| || ||    
T  51361191 ggaatgataggatttttaataagattgttaaagatcacggtgaaattgtttatgacattaaggtgcttttgtggaattggacggttactagactcaaaag 51361290  T
Q  150 tcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactt 237  Q
    | |||| ||||||||||| ||||||||||||||||| |  |||||| ||||||||||| ||||| ||||||||||||||| |||||||    
T  51361291 ttctccctgcctctattatgagtggtgttggaaccccaaggaatgcctattgagatagttggggtagttttagaggtgtcagggactt 51361378  T

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Target: scaffold0691 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 1097 - 1289
Alignment:
Q  50 ggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagag 149  Q
    ||||||||||||||||||||  | |  |||  |||||||| ||||| ||||| || ||||||||| |  | ||||||||||||| | | |||||||||||    
T  1097 ggaatgataggatttttaattctattgtgaaagattatggggaaattgttgatgacattaaggtgctcccttggaattgggcgattacaagacttaagag 1196  T
Q  150 tcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggacttatggt 242  Q
    |||||| ||||||| ||| |||||||||||||| || |  ||||||||  |  || || ||||| ||||||||||||||| ||||||| ||||    
T  1197 tcctccctgcctcttttatgagtggtgttggaagcccaaggaatgcttgctccgacaggtggggtagttttagaggtgtccgggacttttggt 1289  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 13155021 - 13155117
Alignment:
Q  145 aagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggacttatggt 242  Q
    ||||||||| |||||||||||||||||||||||| ||||||||  ||||| ||| ||||| || | ||| || ||||||||||| |||||||| ||||    
T  13155021 aagagtcctacttgcctctattacgagtggtgtttgaaccctaaagaatgtttactgagaaagctcgggtag-tttagaggtgtttgggacttttggt 13155117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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