View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3650_high_10 (Length: 294)
Name: NF3650_high_10
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3650_high_10 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 50 - 271
Target Start/End: Original strand, 16698 - 16928
Alignment:
| Q |
50 |
aatttttgctacataatagtgcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggt |
149 |
Q |
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| T |
16698 |
aatttttgctacataatagtgcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggt |
16797 |
T |
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| Q |
150 |
tttttgtttctac---------attgataatatttggttaattttgtattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatg |
240 |
Q |
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| T |
16798 |
tttttgtttctacattgataatattgataatatttggttaattttgtattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatg |
16897 |
T |
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| Q |
241 |
aatttagttgcagattattaactcatccatc |
271 |
Q |
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| T |
16898 |
aatttagttgcagattattaactcatccatc |
16928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 50 - 271
Target Start/End: Complemental strand, 1401660 - 1401430
Alignment:
| Q |
50 |
aatttttgctacataatagtgcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggt |
149 |
Q |
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| T |
1401660 |
aatttttgctacataatagtgcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggt |
1401561 |
T |
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| Q |
150 |
tttttgtttctacattgataa---------tatttggttaattttgtattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatg |
240 |
Q |
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| T |
1401560 |
tttttgtttctacattgataatattgataatatttggttaattttgtattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatg |
1401461 |
T |
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| Q |
241 |
aatttagttgcagattattaactcatccatc |
271 |
Q |
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| T |
1401460 |
aatttagttgcagattattaactcatccatc |
1401430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 1376218 - 1376128
Alignment:
| Q |
168 |
taatatttggttaattttgtattggctttataggtatgcatttgtttgaaaag--cttctatgcaatgtgata-tgaatttagttgcagat |
255 |
Q |
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|||||||||||||| |||| |||| |||| |||| ||||| || ||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
1376218 |
taatatttggttaaatttgaattgactttgtaggaatgcacttctttgaaaagttattctatgcaatgtgatagggattttagttgcagat |
1376128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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