View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3650_high_18 (Length: 238)
Name: NF3650_high_18
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3650_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 34142686 - 34142479
Alignment:
| Q |
18 |
gctcttggtgctggtccacataaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaacagt |
117 |
Q |
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| T |
34142686 |
gctcttggtgctggtccacataaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaacagt |
34142587 |
T |
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| Q |
118 |
ggg-tcttgtgaaacccacaccagatgcttatattattaatgttggtgatgtcattcaggtaccaaaacattatagttttatggacttttgacctaataa |
216 |
Q |
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| T |
34142586 |
gggttcttgtgaaacccacaccagatgcttatattattaatgttggtgatgtcattcaggtacc-aaacattatagttttatggacttttgacctaataa |
34142488 |
T |
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| Q |
217 |
atgttgtct |
225 |
Q |
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||||||||| |
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| T |
34142487 |
atgttgtct |
34142479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 34131170 - 34131029
Alignment:
| Q |
39 |
aaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaacagtggg-tcttgtgaaacccacac |
137 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |||| |||||||||||| || | |
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| T |
34131170 |
aaggatgctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcgtaaatcagaccaacaatgggttcttgtgaaacctaccc |
34131071 |
T |
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| Q |
138 |
cagatgcttatattattaatgttggtgatgtcattcaggtac |
179 |
Q |
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| T |
34131070 |
cagatgcttacattatcaatgttggtgatatcattcaggtac |
34131029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 34136861 - 34136720
Alignment:
| Q |
39 |
aaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaacagtggg-tcttgtgaaacccacac |
137 |
Q |
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| T |
34136861 |
aaggatgctggtgccttaactattcttgcccaagatgatgttgggggtcttgaagtgaagcacaaagcatcacaagagtgggttcttgtgaaacctacct |
34136762 |
T |
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| Q |
138 |
cagatgcttatattattaatgttggtgatgtcattcaggtac |
179 |
Q |
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| T |
34136761 |
cagatgcttacattatcaacgtttgtgatattatccaggtac |
34136720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 34126028 - 34125968
Alignment:
| Q |
39 |
aaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagc |
99 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
34126028 |
aaggatgctggtgccttaactattcttgcccaagatgaggttgctggtcttgaagtgaagc |
34125968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 34140019 - 34139943
Alignment:
| Q |
39 |
aaggattctggtgccttaactattcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaaca |
115 |
Q |
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|||||| |||||||||| ||||||||| ||| | ||||||||| ||| |||||||||||||| |||||||||||||| |
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| T |
34140019 |
aaggatgctggtgccttgactattcttaccctaaatgaggttgaaggtcttgaagtgaagcgtaaaacagatcaaca |
34139943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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