View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3650_high_2 (Length: 764)

Name: NF3650_high_2
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3650_high_2
NF3650_high_2
[»] chr4 (3 HSPs)
chr4 (430-697)||(28563705-28563964)
chr4 (57-144)||(1967812-1967899)
chr4 (14-59)||(1967593-1967638)
[»] scaffold0001 (1 HSPs)
scaffold0001 (16-136)||(12444-12564)
[»] chr6 (3 HSPs)
chr6 (14-144)||(11681970-11682100)
chr6 (13-102)||(18985578-18985667)
chr6 (14-61)||(11681842-11681889)
[»] chr5 (1 HSPs)
chr5 (13-102)||(23919850-23919939)
[»] chr8 (1 HSPs)
chr8 (13-102)||(30344110-30344199)
[»] chr7 (5 HSPs)
chr7 (63-144)||(25350428-25350509)
chr7 (63-144)||(25356122-25356203)
chr7 (14-75)||(33098112-33098173)
chr7 (14-61)||(25350264-25350311)
chr7 (14-61)||(25355958-25356005)
[»] chr3 (1 HSPs)
chr3 (539-690)||(20042148-20042292)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 5e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 430 - 697
Target Start/End: Original strand, 28563705 - 28563964
Alignment:
Q  430 attaaacatgcaaacaatcatataaacatgtataacacgtgaatccagatacaaattacttagaagcattcaattagaatttcaatcaaatccacaaagt 529  Q
    |||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||  |||||| ||||||||| ||| || || ||||| |||||    
T  28563705 attaaacatgcaaacaatcatataaacaagtataacacatgaattcagaaacaaattactaggaagcaatcaattagagtttaaaacatatccataaagt 28563804  T
Q  530 tnnnnnnnntgtcaagagcttacgctttgggctgcctctgcagttccaaactcaacatgtctaaagcatttaaaccttccatcctcaatcctcatccaaa 629  Q
    |        ||  || ||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||        ||||||||| ||    
T  28563805 t-gtaaatatgcaaatagcttacgctttgggctgcctctgcagatgcaaactcaacatgtccaaagcctttaaaccttcc-------ctcctcatccgaa 28563896  T
Q  630 gcaagacgtacatcaacaacctctccgcaatcttggaagaaattttctctaaaaaatttcagttagat 697  Q
    | || |||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||    
T  28563897 gaaaaacgtacatcaacaacctctccgcagtcttggaagaacttttctctgaataatttcagttagat 28563964  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 1967812 - 1967899
Alignment:
Q  57 tgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggatttttcagctttgttacgctcaacggtaat 144  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||   |||||||||||| |||||||    
T  1967812 tgtcgtcctcttgtaggtggttgtccctaacaaactggaaccaacctcctcccaatgatttttcaagcttgttacgctcagcggtaat 1967899  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1967593 - 1967638
Alignment:
Q  14 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgt 59  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  1967593 acaaacaacactgtaggaggaacacccaaatcaaatagcagcttgt 1967638  T

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Target: scaffold0001 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 12564 - 12444
Alignment:
Q  16 aaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggat 115  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  12564 aaacaacattgtaggaggaacacctaaatcgaatagcagcttgtcgccctcttgtaggtaattgtccctaacaaattgtaaccaacctcctcccaaggat 12465  T
Q  116 ttttcagctttgttacgctca 136  Q
    |||||||||||||||||||||    
T  12464 ttttcagctttgttacgctca 12444  T

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Target: chr6 (Bit Score: 83; Significance: 6e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 11681970 - 11682100
Alignment:
Q  14 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaagg 113  Q
    |||||||||| |||||||   ||||| ||||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  11681970 acaaacaacattgtaggaaagacacccaaatcaaatagctacttgtcgtcctcttgtaggtgattgtccctaacaaactggaaccaacctcctcccaagg 11682069  T
Q  114 atttttcagctttgttacgctcaacggtaat 144  Q
    |||||||||| |||||||||||| |||||||    
T  11682070 atttttcagccttgttacgctcagcggtaat 11682100  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 18985578 - 18985667
Alignment:
Q  13 cacaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 102  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18985578 cacaaacaacactgtaggaggaacacctaaatcgaatagcagcttgtcgtcctcttgtaggtgattgtccctaacaaattggaaccaacc 18985667  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 11681842 - 11681889
Alignment:
Q  14 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcg 61  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  11681842 acaaacaacattgtaggaggaacacctaaatcaaatagcagcttgtcg 11681889  T

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Target: chr5 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 23919939 - 23919850
Alignment:
Q  13 cacaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 102  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23919939 cacaaacaacactgtaggaggaacacctaaatcgaatagcagcttgtcgtcctcttgtaggtgattgtccctaacaaattggaaccaacc 23919850  T

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Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 30344199 - 30344110
Alignment:
Q  13 cacaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 102  Q
    |||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30344199 cacaaacaacactgtaggagtaacacctaaatcgaataacagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 30344110  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 25350428 - 25350509
Alignment:
Q  63 cctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggatttttcagctttgttacgctcaacggtaat 144  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||| |||||||    
T  25350428 cctcttgtaggtgattgtccctaacaaactggaaccaacctcttcccaaggatttttcagccttgttacgctcagcggtaat 25350509  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 25356122 - 25356203
Alignment:
Q  63 cctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggatttttcagctttgttacgctcaacggtaat 144  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||| |||||||    
T  25356122 cctcttgtaggtgattgtccctaacaaactggaaccaacctcttcccaaggatttttcagccttgttacgctcagcggtaat 25356203  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 33098112 - 33098173
Alignment:
Q  14 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtg 75  Q
    |||||||||| ||||||||||||| | ||||| |||||||||||||| ||||||||||||||    
T  33098112 acaaacaacattgtaggaggaacatccaaatcgaatagcagcttgtcaccctcttgtaggtg 33098173  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 25350264 - 25350311
Alignment:
Q  14 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcg 61  Q
    ||||||||||||| |||||||||||| ||||| || ||||||||||||    
T  25350264 acaaacaacactgcaggaggaacacccaaatcgaaaagcagcttgtcg 25350311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 25355958 - 25356005
Alignment:
Q  14 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcg 61  Q
    ||||||||||||| |||||||||||| ||||| || ||||||||||||    
T  25355958 acaaacaacactgcaggaggaacacccaaatcgaaaagcagcttgtcg 25356005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 539 - 690
Target Start/End: Complemental strand, 20042292 - 20042148
Alignment:
Q  539 tgtcaagagcttacgctttgggctgcctctgcagttccaaactcaacatgtctaaagcatttaaaccttccatcctcaatcctcatccaaagcaagacgt 638  Q
    |||||||||| || |  ||||||||||||||||||| ||||||||||||||| ||||| ||| | | |||||||||||     ||    | |||||||||    
T  20042292 tgtcaagagcgtatgtattgggctgcctctgcagttgcaaactcaacatgtccaaagcctttgagctttccatcctca-----ca--agacgcaagacgt 20042200  T
Q  639 acatcaacaacctctccgcaatcttggaagaaattttctctaaaaaatttca 690  Q
    ||||||||||||||||| ||| || ||||||| |||||||| || |||||||    
T  20042199 acatcaacaacctctccacaaactcggaagaagttttctctgaataatttca 20042148  T

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