View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3650_high_6 (Length: 464)
Name: NF3650_high_6
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3650_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 34567919 - 34567480
Alignment:
| Q |
1 |
tggttcaagttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567919 |
tggttcaagttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaat |
34567820 |
T |
|
| Q |
101 |
aaagcaaaatttgattatgaaagaattgtcctcactgctggtgctactgctgccaatgagctcttgactttcattcttgcaaatccaggagatgctttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567819 |
aaagcaaaatttgattatgaaagaatcgtcctcactgctggtgctactgctgccaatgagctcttgactttcattcttgcaaatccaggagatgctttac |
34567720 |
T |
|
| Q |
201 |
ttgttccaacaccatactatcctgggtaagaagttttctcttttcacacttcaatacatttttatatttttctcttaccataattaataatggaaccttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567719 |
ttgttccaacaccatactatcctgggtaagaaattttctcttttcacacttcaatacatttttatatttttctcttaccataattaataatggaaccttc |
34567620 |
T |
|
| Q |
301 |
ctataccaaaaataccaaaaattttataatatagtttcaaaatgtcaaacnnnnnnnncccttggaacttgcaacttaactatttgctctatgagtacaa |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567619 |
ctataccaa---------aaattttataatatagtttcaaaatgtcaaacttttttttttcttggaacttgcaacttaactatttgctctatgagtacaa |
34567529 |
T |
|
| Q |
401 |
tatattctataatatatttgcttaaatgcattttcggtcgtctattttt |
449 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
34567528 |
tatattctataatatttttgcttaaatgcattttcggccgtctattttt |
34567480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 42790326 - 42790103
Alignment:
| Q |
9 |
gttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaataaagcaaa |
108 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||| | |
|
|
| T |
42790326 |
gtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcatggaacaaataagaggtggtaaagctac |
42790227 |
T |
|
| Q |
109 |
atttgattatgaaagaattgtcctcactgctggtgctactgctgccaatgagctcttgactttcattcttgcaaatccaggagatgctttacttgttcca |
208 |
Q |
| |
|
|||||||| |||||||| ||| ||||||| || || ||||| || |||||||| || || |||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
42790226 |
atttgattcggaaagaatagtcatcactgccggagcaactgcggctaatgagcttttaaccttcattcttgcaaaccccggagatgctttgcttgttccc |
42790127 |
T |
|
| Q |
209 |
acaccatactatcctgggtaagaa |
232 |
Q |
| |
|
|| || |||||||| ||||||||| |
|
|
| T |
42790126 |
accccttactatccagggtaagaa |
42790103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 42799866 - 42799643
Alignment:
| Q |
9 |
gttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaataaagcaaa |
108 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||| | |
|
|
| T |
42799866 |
gtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcatggaacaaataagaggtggtaaagctac |
42799767 |
T |
|
| Q |
109 |
atttgattatgaaagaattgtcctcactgctggtgctactgctgccaatgagctcttgactttcattcttgcaaatccaggagatgctttacttgttcca |
208 |
Q |
| |
|
|||||||| |||||||| ||| ||||||| || || ||||| || |||||||| || || |||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
42799766 |
atttgattcggaaagaatagtcatcactgccggagcaactgcggctaatgagcttttaaccttcattcttgcaaaccccggagatgctttgcttgttccc |
42799667 |
T |
|
| Q |
209 |
acaccatactatcctgggtaagaa |
232 |
Q |
| |
|
|| || |||||||| ||||||||| |
|
|
| T |
42799666 |
accccttactatccagggtaagaa |
42799643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University