View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3650_low_12 (Length: 277)
Name: NF3650_low_12
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3650_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 23411012 - 23411245
Alignment:
| Q |
16 |
actaacactcctcattctcttcctccaaacccctaacacctgcgtcccatcagaagccccatccaaaccccacctccgcttccccaaatccacctgcgac |
115 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23411012 |
actaacactcctcattctcttcctccaaatccccaacacccgcgtcccatcagaagcaccatccaaaccccacctccgcttccccaaatccacctgcgac |
23411111 |
T |
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| Q |
116 |
ttcacctccacccgcctccacctcccctcccacaagaaaaacaaccgtttctggtcctcacgcgattggaacaacaaactccattccttctcccgtctct |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23411112 |
ttcacctccacccacctccacctcccctcccacaagaaaaacaaccgtctctggtcctcacgcgattggaacaacaaactccattccttctcccgtctct |
23411211 |
T |
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| Q |
216 |
tcctccatattcgcaatctcggtcttcttcctaa |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
23411212 |
tcctccatattcgcaatctcggtcttcttcctaa |
23411245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 16538434 - 16538551
Alignment:
| Q |
80 |
aaaccccacctccgcttccccaaatccacctgcgacttcacctccacccgcctccacctcccctcccacaagaaaaacaaccgtttctggtcctcacgcg |
179 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
16538434 |
aaaccccacttccgcttccctaaatccacctgcgacttcacctcctcccgccccagcctcccctccgacaagaaaaacaaccgtctctggtcctcacgcg |
16538533 |
T |
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| Q |
180 |
attggaacaacaaactcc |
197 |
Q |
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| T |
16538534 |
actggaacaacaaactcc |
16538551 |
T |
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