View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3650_low_14 (Length: 257)
Name: NF3650_low_14
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3650_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 27312831 - 27312602
Alignment:
| Q |
19 |
acgtgccactgctcattctcgtaaaacttacacaactttttgcacgcttaagcgtcgtcgtgttcatcatcatctgctttcgaactttatcgggtaatct |
118 |
Q |
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| T |
27312831 |
acgtgccactgctcattctcgtaaaacttacacaactttttgcacgcttaagtgtcgtcgtgttcaacatcatctgctttcgaactttatcgggtaacct |
27312732 |
T |
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| Q |
119 |
caatgtaaacctctcacaatcctcacctggttgcaccaacacacctgttgagtttgaccgtgataacaagagaatagataagaatcctgttgatcttgac |
218 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27312731 |
cagtgtaaacctctcacaatcctcacctggttgcaccaacacacctgttgagtttgaccgtgataacaagagaatagataagaatcctgttgatcttgac |
27312632 |
T |
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| Q |
219 |
cgtgttggtgcagaatatgttttagaccta |
248 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
27312631 |
cgtgttggtgcagaatatgttttagaccta |
27312602 |
T |
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