View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3650_low_15 (Length: 250)

Name: NF3650_low_15
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3650_low_15
NF3650_low_15
[»] chr1 (1 HSPs)
chr1 (1-240)||(51759779-51760019)
[»] chr6 (2 HSPs)
chr6 (136-240)||(6685179-6685283)
chr6 (1-72)||(17718637-17718708)
[»] chr2 (1 HSPs)
chr2 (1-132)||(15514593-15514725)
[»] chr7 (2 HSPs)
chr7 (1-72)||(9241398-9241469)
chr7 (54-119)||(19747518-19747585)
[»] chr5 (3 HSPs)
chr5 (3-73)||(17038716-17038786)
chr5 (25-72)||(23615512-23615559)
chr5 (25-72)||(23846908-23846955)
[»] chr8 (1 HSPs)
chr8 (1-49)||(45355460-45355508)
[»] chr4 (1 HSPs)
chr4 (1-49)||(43600971-43601019)
[»] chr3 (2 HSPs)
chr3 (1-49)||(2550870-2550918)
chr3 (1-49)||(13846696-13846744)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 51760019 - 51759779
Alignment:
Q  1 tgaattatctttgcttattcttttggtgtgtttgattgaatagactgaccccgaaattgatggaatgcttcaccgtttgaataatggtaattattaaatt 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  51760019 tgaattatctttgcttattcttttggtgtgtttgatcgaataggttgaccccagaattggtggaatgcttcacagtttgaataatggtaattattaaatt 51759920  T
Q  101 tcctt--tcttttagataaaagatttggtgttaaattttcctattgtcttcaaattctaataacataactagagtctcgagtagctgaagtttggtaatt 198  Q
    |||||  ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51759919 tccttgttcttttagataaaagatttggtgttaaattt-cctattgtgttcaaattctaataacataactagagtctcgagtagctgaagtttggtaatt 51759821  T
Q  199 aatctatatttcaggcctattactcgtgagattgaacctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  51759820 aatctatatttcaggcctattactcgtgagattgaacctatg 51759779  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 6685283 - 6685179
Alignment:
Q  136 ttcctattgtcttcaaattctaataacataactagagtctcgagtagctgaagtttggtaattaatctatatttcaggcctattactcgtgagattgaac 235  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||  | |||||||||||    
T  6685283 ttcctattgtgttcaaattctaataacataactagagtctcgagtagctgaagtttggtaattaagctttatttcagacctattatacatgagattgaac 6685184  T
Q  236 ctatg 240  Q
     ||||    
T  6685183 ttatg 6685179  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 17718637 - 17718708
Alignment:
Q  1 tgaattatctttgcttattcttttggtgtgtttgattgaatagactgaccccgaaattgatggaatgcttca 72  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||  |  |||| ||||||||||||    
T  17718637 tgaattatctttgcttattcttttggtgtgtttgattgaataggctgaccttgggattggtggaatgcttca 17718708  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 15514725 - 15514593
Alignment:
Q  1 tgaattatctttgcttattcttttggtgtgtttgattgaatagactgaccccgaaattgatggaatgcttcaccgtttgaataatggtaattattaaatt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||| ||   |||| ||||||||||||| |||||||||||| ||||| |||||||    
T  15514725 tgaattatctttgcttattcttttggtgtatttgattgaataagctgactccaggattggtggaatgcttcacagtttgaataatgttaatttttaaatt 15514626  T
Q  101 tcct--ttcttttagataaaagatttggtgttaa 132  Q
      ||  ||||||||||||||| ||||| ||||||    
T  15514625 gtcttattcttttagataaaa-atttgatgttaa 15514593  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 9241398 - 9241469
Alignment:
Q  1 tgaattatctttgcttattcttttggtgtgtttgattgaatagactgaccccgaaattgatggaatgcttca 72  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||||||    
T  9241398 tgaattatctttgcttattcttttggtgtgtttgattgaataggctgaccccgggattggtggaatgcttca 9241469  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 19747585 - 19747518
Alignment:
Q  54 aaattgatggaatgcttcaccgtttgaataatggtaattattaaatttcctt--tcttttagataaaa 119  Q
    ||||||||||||||||| || |||||||||||||||||| | ||||| ||||  ||||||||||||||    
T  19747585 aaattgatggaatgctttacagtttgaataatggtaattttaaaattgccttgctcttttagataaaa 19747518  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 17038786 - 17038716
Alignment:
Q  3 aattatctttgcttattcttttggtgtgtttgattgaatagactgaccccgaaattgatggaatgcttcac 73  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||||| |||| |||||||||||||    
T  17038786 aattatctttgcttattcttttggtgtgtttgattgaataggctgttcccgagattggtggaatgcttcac 17038716  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 23615512 - 23615559
Alignment:
Q  25 ggtgtgtttgattgaatagactgaccccgaaattgatggaatgcttca 72  Q
    ||||||||||||||||||| |||||||||  |||| ||||||||||||    
T  23615512 ggtgtgtttgattgaataggctgaccccgggattggtggaatgcttca 23615559  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 23846908 - 23846955
Alignment:
Q  25 ggtgtgtttgattgaatagactgaccccgaaattgatggaatgcttca 72  Q
    ||||||||||||||||||| |||||||||  |||| ||||||||||||    
T  23846908 ggtgtgtttgattgaataggctgaccccgggattggtggaatgcttca 23846955  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45355460 - 45355508
Alignment:
Q  1 tgaattatctttgcttattcttttggtgtgtttgattgaatagactgac 49  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45355460 tgaattatctttgcttattcttttggtgtgtttgattgaataggctgac 45355508  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43601019 - 43600971
Alignment:
Q  1 tgaattatctttgcttattcttttggtgtgtttgattgaatagactgac 49  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43601019 tgaattatctttgcttattcttttggtgtgtttgattgaataggctgac 43600971  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2550918 - 2550870
Alignment:
Q  1 tgaattatctttgcttattcttttggtgtgtttgattgaatagactgac 49  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2550918 tgaattatctttgcttattcttttggtgtgtttgattgaataggctgac 2550870  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13846744 - 13846696
Alignment:
Q  1 tgaattatctttgcttattcttttggtgtgtttgattgaatagactgac 49  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13846744 tgaattatctttgcttattcttttggtgtgtttgattgaataggctgac 13846696  T

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