View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3650_low_17 (Length: 248)

Name: NF3650_low_17
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3650_low_17
NF3650_low_17
[»] chr1 (2 HSPs)
chr1 (1-234)||(51760901-51761134)
chr1 (3-60)||(29277921-29277978)
[»] chr8 (1 HSPs)
chr8 (3-60)||(45355289-45355346)
[»] chr6 (1 HSPs)
chr6 (3-60)||(17718466-17718523)
[»] chr5 (3 HSPs)
chr5 (3-60)||(23760984-23761041)
chr5 (3-60)||(23826445-23826502)
chr5 (3-60)||(17038902-17038959)
[»] chr4 (2 HSPs)
chr4 (3-60)||(1153129-1153186)
chr4 (3-60)||(43601133-43601190)
[»] chr3 (2 HSPs)
chr3 (3-60)||(2551032-2551089)
chr3 (3-60)||(13846858-13846915)
[»] chr2 (1 HSPs)
chr2 (5-60)||(15514839-15514894)
[»] chr7 (1 HSPs)
chr7 (3-51)||(9241236-9241284)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 51760901 - 51761134
Alignment:
Q  1 tactttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagacatctgattatattatttagcaataggctgaggacatctgat 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51760901 tactttattcaaataatgttgtttatcctgattaaataacataatcaattttaaaagacatctgattatattatttagcaataggctgaggacatctgat 51761000  T
Q  101 ttcatcaagtgttgatgattttactgatataaagtgcttcaatgttccaggtagagctaattctaccaaaaattcaaacaaccatggaaggaaggccaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51761001 ttcatcaagtgttgatgattttactgatataaagtgcttcaatgttccaggtagagctaattctaccaaaaattcaaacaaccatggaaggaaggccaat 51761100  T
Q  201 agtccatcacaaggagcacaagaacatggtaagt 234  Q
    ||||||||||||||||||||||||||||||||||    
T  51761101 agtccatcacaaggagcacaagaacatggtaagt 51761134  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 29277978 - 29277921
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29277978 ctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 29277921  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 45355346 - 45355289
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45355346 ctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 45355289  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 17718523 - 17718466
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17718523 ctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 17718466  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 23761041 - 23760984
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23761041 ctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 23760984  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 23826502 - 23826445
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23826502 ctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 23826445  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 17038902 - 17038959
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17038902 ctttatccaaataatgttgtttatccggattaaataatataatcaattttaaaagaca 17038959  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 1153129 - 1153186
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1153129 ctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 1153186  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 43601133 - 43601190
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43601133 ctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 43601190  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 2551032 - 2551089
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2551032 ctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 2551089  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 13846858 - 13846915
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13846858 ctttatccaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 13846915  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 15514839 - 15514894
Alignment:
Q  5 ttattcaaataatgttgtttatcctgattaaataatataatcaattttaaaagaca 60  Q
    |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  15514839 ttatccaaataatgttgtttctcctgattaaataatataattaattttaaaagaca 15514894  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 9241284 - 9241236
Alignment:
Q  3 ctttattcaaataatgttgtttatcctgattaaataatataatcaattt 51  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  9241284 ctttatccaaataatgttgtttatactgattaaataatataatcaattt 9241236  T

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