View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3650_low_18 (Length: 244)
Name: NF3650_low_18
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3650_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 16409912 - 16410136
Alignment:
| Q |
4 |
gaacgagcagaacctgtgctgaatgtaattcaagactgcaaagtcgctatagtcccaggttcttgcctccttcacgtatccaaaagaaactttgattttc |
103 |
Q |
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| T |
16409912 |
gaacgggcagagtctgtgctgaatgtaattcaagactgcaaagtcgctatagtcccaggttcttgcctccttcacgtatccaaaagaaactttgattttc |
16410011 |
T |
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| Q |
104 |
ctatcactatattgttgagtaaaatcacaaaatccttttaagttgacattttaataataataaacttagttgaatataatatcatattgattatgatatg |
203 |
Q |
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| T |
16410012 |
ttatcactatattgttgagtaaaatcacaaaatccttttaagttgacattttaataataataaacttagttgaatataatatcatattgattatgatatg |
16410111 |
T |
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| Q |
204 |
ttatgttttctgacaagttttttat |
228 |
Q |
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| T |
16410112 |
ttatgttttctgacaagttttttat |
16410136 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 6594127 - 6594087
Alignment:
| Q |
17 |
ctgtgctgaatgtaattcaagactgcaaagtcgctatagtc |
57 |
Q |
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| T |
6594127 |
ctgtgctgaatgtaattcaagactgcaaagtcgctgtagtc |
6594087 |
T |
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