View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3650_low_5 (Length: 474)
Name: NF3650_low_5
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3650_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 27099316 - 27098870
Alignment:
| Q |
11 |
cagagagagagaaaataataaataaaaacaatggaaggaggaggaatgttatcatcttcatcatcacattcacaaaactatatctacagagagtgtttaa |
110 |
Q |
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| T |
27099316 |
cagagagagagaaaataataaataaaaacaatggaaggaggaggaatgttatcatcttcatcatcacattcacaaaactatatctacagagagtgtttaa |
27099217 |
T |
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| Q |
111 |
gaaaccatgcagcaagccttggaagctacgccaccgacggctgcggtgaattcaccatcgatgactcatcgccatccgcggtaaacagcctccaatgtgc |
210 |
Q |
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| T |
27099216 |
gaaaccatgcagcaagccttggaagctacgccaccgacggctgcggtgaattcaccatcgacgactcatcgccatccgcggtaaacagcctccaatgtgc |
27099117 |
T |
|
| Q |
211 |
agcctgcggctgtcaccggaacttccaccgcaaaataaccgcgatcacaagggagagtgccgcggctgctgcaatgtcggatcagatgatggaatattcc |
310 |
Q |
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| T |
27099116 |
agcctgcggctgtcaccggaacttccaccgcaaaataaccgcgatcacaagggagagtgccgcggctgctgcaatgtcggatcagatgatggaatattcc |
27099017 |
T |
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| Q |
311 |
ggtggaggaggtagtggaagtgatgggaggaggaagaggtaccggacgaaatttacgccggatcagaaggagaagatgatgggatttgctgagaagttag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099016 |
ggtggaggaggtagtggaagtgatgggaggaggaagaggtaccggacgaaatttacgccggatcagaaggagaagatgatgggatttgctgagaagttag |
27098917 |
T |
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| Q |
411 |
gatggaaattgcagagaaaagaacttgatgaagagattgaaaggttt |
457 |
Q |
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| T |
27098916 |
gatggaaattgcagagaaaagaacttgatgaagagattgaaaggttt |
27098870 |
T |
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