View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3650_low_6 (Length: 472)
Name: NF3650_low_6
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3650_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 3816934 - 3816644
Alignment:
| Q |
1 |
tgtgcctgtgtttattgttattttgttcgataaaacttgagaaaattatttgctttgtgtcgtatttggtttttt-ccgacacgtatttgtcttggacag |
99 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
3816934 |
tgtgcctgtgtttattgtgattgtgttcgataaaacttgagaaaattatttgctttgcgtcgtatttggtttttttccaacacgtatttgtcttggacag |
3816835 |
T |
|
| Q |
100 |
tattaattaatttagtttatcatcataaataaatatttttcgattgttgatagtggatcgatgatgattcagcttgcctttataaattaaatagtgacat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3816834 |
tattaattaatttagtttatcatcataaataaatattttgcgattgttgatagtggatcgatgatgattcagcttgcctttataaattaaatagtgacat |
3816735 |
T |
|
| Q |
200 |
actgtcaatttttccttcacttaatccagcaatttcaaaggtagatatatatttataaattaaaatcgtgtattggctttcaacatttttt |
290 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3816734 |
actgtcaatttttccttcacttgatccagcaatttcaaaggtagatatatatttataaattaaaatcgtgtattggctttctacatttttt |
3816644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 31052276 - 31052684
Alignment:
| Q |
1 |
tgtgcctgtgtttattgttattt-----tgttcgataaaacttgagaaaattatttgctttgtgtcgtatttggttttttccgacacgtatttgtcttgg |
95 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
31052276 |
tgtgcctgtgtttattgttatttacttttgttcgataaaaattgagaaaattatttgctttgtgtcgtatttggtttttgccggcacgtatttgtcttgg |
31052375 |
T |
|
| Q |
96 |
acagtattaattaatttagtttatcatcataaataaatatttttcgattgttgatagtggatcgatgatgattcagcttgcctttataaattaaatagtg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||||||||| | | ||| |
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| T |
31052376 |
acagtattaattaatttagtttatcatcataaataaatattttgcgactgttgatactggattgatgatgattcagcttgcctttatag-taacatat-- |
31052472 |
T |
|
| Q |
196 |
acatactgtcaatttttccttcacttaatccagcaatttcaaagg-tagatatatatttataaattaaaatcgtgtattggctttcaacatttt-ttgtt |
293 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| ||||||||||||||| |||| || |||| ||||| |
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| T |
31052473 |
--atactgtcaatttttccttcacttgatccagcaatttcaaggtatatatatatatttataaatcaaaatcgtgtattggttttctacttttttttgtt |
31052570 |
T |
|
| Q |
294 |
atggaatttgtactaccttatctgttgcttcgattgatctcaatttggtgtgattctgaagtatatttcatagcatataatataacatatatttaggcca |
393 |
Q |
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||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31052571 |
atggaatttgtgctactttatctgttgcttcgattaatctcaatttggtgtgattatgaagtatatttcatagcatataatataacatatatttaggcc- |
31052669 |
T |
|
| Q |
394 |
aaattttatcttatt |
408 |
Q |
| |
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||||||||||||||| |
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|
| T |
31052670 |
aaattttatcttatt |
31052684 |
T |
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