View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3650_low_9 (Length: 346)
Name: NF3650_low_9
Description: NF3650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3650_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 48487160 - 48486820
Alignment:
| Q |
1 |
gcctgctgttgtcattgatcctattttacaagctcctgagtctgttcttagatgttgtgttcccgatgcaatttgtgttatgtttttcggttattcgaaa |
100 |
Q |
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| T |
48487160 |
gcctgctgttgtcattgatcctatttcacaagctcctgagtctgttcttagacgttgtgttcccgatgcaatttgtgttatgtttttcggttattcgaaa |
48487061 |
T |
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| Q |
101 |
aatggaaagcacagggtaagctcttctcaacacacctttatgtaaaggtttgagttgttgttattgttgaaatctaatgaatttgtgatgggcacttggc |
200 |
Q |
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| T |
48487060 |
aatggaaagcacagggtaagctcttctcaacacacctttatgtaaaggtttgagttgttgttattgttgaaatctaatgaatttgtgatgggcacttggc |
48486961 |
T |
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| Q |
201 |
aggactatgcatgggcgaagcaggggatggtattccccttcttggaattcatggataggtttgtgtttgtg--tgtgattttggttgttgttctgcctgc |
298 |
Q |
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| T |
48486960 |
aggactatgcatgggcgaagcaggggatggtattccccttcttggaattcatggataggtttgtgtttgtgtgtgtgattttggttgttgttctgcctgc |
48486861 |
T |
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| Q |
299 |
aagaatatttggcttgtattcgctcatattaagaataatct |
339 |
Q |
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| T |
48486860 |
aagaatatttggcttgtactcgctcatattaagaataatct |
48486820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 10032671 - 10032725
Alignment:
| Q |
53 |
tgttgtgttcccgatgcaatttgtgttatgtttttcggttattcgaaaaatggaa |
107 |
Q |
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| T |
10032671 |
tgttgtgttccggatacactttgtgtgatgtttttcggttattcgaaaaatggaa |
10032725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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