View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3651_high_23 (Length: 265)

Name: NF3651_high_23
Description: NF3651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3651_high_23
NF3651_high_23
[»] chr1 (4 HSPs)
chr1 (4-255)||(49145021-49145272)
chr1 (1-148)||(4235425-4235572)
chr1 (1-104)||(49149565-49149668)
chr1 (172-255)||(4235623-4235706)
[»] chr5 (1 HSPs)
chr5 (15-145)||(35625806-35625936)
[»] chr7 (8 HSPs)
chr7 (1-115)||(28614652-28614765)
chr7 (3-115)||(29269797-29269909)
chr7 (1-115)||(28621250-28621364)
chr7 (11-115)||(28612936-28613040)
chr7 (1-145)||(29287628-29287772)
chr7 (2-76)||(29275363-29275437)
chr7 (2-115)||(29279196-29279309)
chr7 (1-115)||(29282174-29282288)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 255
Target Start/End: Original strand, 49145021 - 49145272
Alignment:
Q  4 ctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49145021 ctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatca 49145120  T
Q  104 aaatcatcaattcaagaccaatgcactacccatgctaatgatatctcgttcttctatagagatgaattggttgtatggtattctaaacaaaagatggcac 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  49145121 aaatcatcaattcaagaccaatgcactacccatgctaatgatatctcgttcttctacagagaagaattggttgtatggtattctaaacaaaagatggcac 49145220  T
Q  204 ccttttcaatttcaggtatgccatgctaataatagtaaactttcgctctgtg 255  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49145221 ccttttcaatttcagttatgccatgctaataatagtaaactttcgctctgtg 49145272  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 4235425 - 4235572
Alignment:
Q  1 ttcctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagcca 100  Q
    ||||||||| |||||| |||||||||||||||||||||||| || |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||    
T  4235425 ttcctcttagtttgatacttgacaagttagaagaacacatatatcatgtttggtttggtgctgtgtgcaagagttggcgatcaattgcaaagtttaacca 4235524  T
Q  101 tcaaaatcatcaattcaagaccaatgcactacccatgctaatgatatc 148  Q
    ||||||||||||||||||| ||||  || |||||||| ||||||||||    
T  4235525 tcaaaatcatcaattcaaggccaacacattacccatgttaatgatatc 4235572  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 49149565 - 49149668
Alignment:
Q  1 ttcctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagcca 100  Q
    ||||||||  |||| ||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||    
T  49149565 ttcctcttggtttggttcttgacatgttagaagaacacatagatcatgtttggtttggtgctgtgtgcaagagttggcgatcaattgcaaagcttaacca 49149664  T
Q  101 tcaa 104  Q
    ||||    
T  49149665 tcaa 49149668  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 4235623 - 4235706
Alignment:
Q  172 ggttgtatggtattctaaacaaaagatggcacccttttcaatttcaggtatgccatgctaataatagtaaactttcgctctgtg 255  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||| ||||    
T  4235623 ggttgtacggtattctaaacaaaagatggtacccttttcaatttcaggtatgccatgctaataaccctaaactttcgctttgtg 4235706  T

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Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 35625936 - 35625806
Alignment:
Q  15 attcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcatcaat 114  Q
    ||||||||||||||||||||||  |||||| |||||| ||| ||||| ||||||||||  |||||||||||||||||||||| |||||||||||| || |    
T  35625936 attcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagt 35625837  T
Q  115 tcaagaccaatgcactacccatgctaatgat 145  Q
    |||  ||  ||| ||||||||||||||||||    
T  35625836 tcagaactcatgtactacccatgctaatgat 35625806  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 28614652 - 28614765
Alignment:
Q  1 ttcctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagcca 100  Q
    |||||||||||||| |||||| |||||||||||||||||||||| |||||  |||  |||  ||||||||||||||||||||| |||||||| ||| |||    
T  28614652 ttcctcttaatttggttcttg-caagttagaagaacacatagatcatgttaggttcagtgtcgtgtgcaagacttggcgatcagttgcaaagcttaacca 28614750  T
Q  101 tcaaaatcatcaatt 115  Q
    |||||| ||||||||    
T  28614751 tcaaaaccatcaatt 28614765  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 29269797 - 29269909
Alignment:
Q  3 cctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatc 102  Q
    ||||||| |||| |||||||| |||| ||||||||||||||| |||||  ||||||||  |||||||||| ||| | ||||||||||||| ||| ||||     
T  29269797 cctcttagtttggttcttgacgagttggaagaacacatagatcatgttaggtttggtgtggtgtgcaagagttgcctatcaattgcaaagcttaaccata 29269896  T
Q  103 aaaatcatcaatt 115  Q
    |||||||||||||    
T  29269897 aaaatcatcaatt 29269909  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 28621250 - 28621364
Alignment:
Q  1 ttcctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagcca 100  Q
    ||||||||| |||| |||||||||| || ||||||||||| ||| |||||  ||||||||  |||||||| | |||||| ||| |||||||||| | |||    
T  28621250 ttcctcttagtttggttcttgacaaattggaagaacacatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaacca 28621349  T
Q  101 tcaaaatcatcaatt 115  Q
    |||||||||||||||    
T  28621350 tcaaaatcatcaatt 28621364  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 28613040 - 28612936
Alignment:
Q  11 tttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatcaaaatcat 110  Q
    |||| ||||||||||||| ||||||||||||||| |||||  ||||| ||  |||||||||||||||| |||| |||||||| ||| ||||||||  |||    
T  28613040 tttggttcttgacaagttggaagaacacatagatcatgttaggtttgctgtcgtgtgcaagacttggctatcagttgcaaagcttaaccatcaaagccat 28612941  T
Q  111 caatt 115  Q
    |||||    
T  28612940 caatt 28612936  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 29287628 - 29287772
Alignment:
Q  1 ttcctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagcca 100  Q
    ||||||||| |||| ||||||| ||||| |||| ||| | ||| ||||||  ||||||||  ||||| |||| ||||| ||||||||| ||| ||| |||    
T  29287628 ttcctcttagtttggttcttgaaaagttggaagtacaaacagactatgttaggtttggtgtggtgtgtaagaattggctatcaattgctaagcttaacca 29287727  T
Q  101 tcaaaatcatcaattcaagaccaatgcactacccatgctaatgat 145  Q
    | ||||||||||||| | ||  |||| |||||| ||||| |||||    
T  29287728 taaaaatcatcaatttaggattaatgtactacctatgcttatgat 29287772  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 29275363 - 29275437
Alignment:
Q  2 tcctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttg 76  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||| |||||  |||| |||  ||||||||||||||    
T  29275363 tcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtagtgtgcaagacttg 29275437  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 29279196 - 29279309
Alignment:
Q  2 tcctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccat 101  Q
    |||||||| |||  ||||||| ||||| ||||||||||||||| |||||  ||||||||  ||||| |||| ||||   ||| |||||| | ||| ||||    
T  29279196 tcctcttagttttgttcttgataagttggaagaacacatagatcatgttaggtttggtgtggtgtgtaagaattggttttcagttgcaacgcttaaccat 29279295  T
Q  102 caaaatcatcaatt 115  Q
     |||||||||||||    
T  29279296 aaaaatcatcaatt 29279309  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 29282174 - 29282288
Alignment:
Q  1 ttcctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagcca 100  Q
    ||||||||| |||| ||||||| ||||| |||| ||| | ||| ||||||  ||| |||| |||||| |||| ||||| ||||  ||| ||| ||| |||    
T  29282174 ttcctcttagtttggttcttgaaaagttggaagtacaaacagactatgttaggttcggtgttgtgtgtaagaattggctatcagctgctaagcttaacca 29282273  T
Q  101 tcaaaatcatcaatt 115  Q
    | |||||||||||||    
T  29282274 taaaaatcatcaatt 29282288  T

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